Detailed information of evm.model.Contig132.112 in Hemicorallium imperiale

Genomic Location: Contig132:235115...236341
NR annotation: WP_198891962.1, serine--tRNA ligase [Sphaerochaeta sp. S2]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig132.112 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q73KB2Serine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104) OX=243275 GN=serS PE=3 SV=1
B8E0R9Serine--tRNA ligase OS=Dictyoglomus turgidum (strain DSM 6724 / Z-1310) OX=515635 GN=serS PE=3 SV=1
B5YEY8Serine--tRNA ligase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) OX=309799 GN=serS PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003530 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00587
all species →		tRNA-synt_2btRNA synthetase class II core domain (G, H, P, S and T)DomainInterproscan
PF02403
all species →		Seryl_tRNA_NSeryl-tRNA synthetase N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006195
all species →		DomainAminoacyl-tRNA synthetase, class IIInterproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR002317
all species →		FamilySerine-tRNA ligase, type1Interproscan
IPR042103
all species →		Homologous_superfamilySerine-tRNA synthetase, type1, N-terminal domain superfamilyInterproscan
IPR002314
all species →		DomainAminoacyl-tRNA synthetase, class II (G/ P/ S/T)Interproscan
IPR010978
all species →		Homologous_superfamilyClass I and II aminoacyl-tRNA synthetase, tRNA-binding armInterproscan
IPR033729
all species →		DomainSerine-tRNA ligase catalytic core domainInterproscan
IPR015866
all species →		DomainSerine-tRNA synthetase, type1, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11778
all species →		SERYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000049
all species →		Molecular FunctiontRNA bindingInterproscan
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004828
all species →		Molecular Functionserine-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006434
all species →		Biological Processseryl-tRNA aminoacylationInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01875SARS, serS; seryl-tRNA synthetaseEC:6.1.1.11
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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