Detailed information of evm.model.Contig132.151 in Hemicorallium imperiale

Genomic Location: Contig132:332793...336352
NR annotation: MCG8479288.1, type I DNA topoisomerase [Spirochaetales bacterium]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig132.151 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P34185DNA topoisomerase 1 OS=Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) OX=1140 GN=topA PE=3 SV=2
P73810DNA topoisomerase 1 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=topA PE=3 SV=1
A0R5D9DNA topoisomerase 1 OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=topA PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0012429 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14667
all species →		Polysacc_synt_CPolysaccharide biosynthesis C-terminal domainFamilyInterproscan
PF13368
all species →		Toprim_C_rptTopoisomerase C-terminal repeatDomainInterproscan
PF01554
all species →		MatEMatEFamilyInterproscan
PF01751
all species →		ToprimToprim domainFamilyInterproscan
PF01131
all species →		Topoisom_bacDNA topoisomeraseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028612
all species →		FamilyDNA topoisomerase I, type IAInterproscan
IPR013497
all species →		DomainDNA topoisomerase, type IA, centralInterproscan
IPR006171
all species →		DomainTOPRIM domainInterproscan
IPR023405
all species →		Homologous_superfamilyDNA topoisomerase, type IA, core domainInterproscan
IPR013826
all species →		Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 3Interproscan
IPR029303
all species →		DomainPolysaccharide biosynthesis protein, C-terminal domainInterproscan
IPR025589
all species →		RepeatTopoisomerase C-terminal repeatInterproscan
IPR013825
all species →		Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 2Interproscan
IPR002528
all species →		FamilyMulti antimicrobial extrusion proteinInterproscan
IPR034149
all species →		DomainDNA topoisomerase 1, TOPRIM domainInterproscan
IPR023406
all species →		Active_siteDNA topoisomerase, type IA, active siteInterproscan
IPR003601
all species →		DomainDNA topoisomerase, type IA, domain 2Interproscan
IPR013824
all species →		Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 1Interproscan
IPR000380
all species →		FamilyDNA topoisomerase, type IAInterproscan
IPR003602
all species →		DomainDNA topoisomerase, type IA, DNA-binding domainInterproscan
IPR005733
all species →		FamilyDNA topoisomerase I, bacterial-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42785
all species →		DNA TOPOISOMERASE, TYPE IA, COREInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003916
all species →		Molecular FunctionDNA topoisomerase activityInterproscan
GO:0006265
all species →		Biological ProcessDNA topological changeInterproscan
GO:0015297
all species →		Molecular Functionantiporter activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0042910
all species →		Molecular Functionxenobiotic transmembrane transporter activityInterproscan
GO:0055085
all species →		Biological Processtransmembrane transportInterproscan
GO:0003917
all species →		Molecular FunctionDNA topoisomerase type I (single strand cut, ATP-independent) activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig132.151.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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