Gene detail

Detailed information of evm.model.Contig132.160 in Hemicorallium imperiale

Genomic Location: Contig132:368007...371427
NR annotation: RKX86066.1, ribosome biogenesis GTPase Der [Spirochaetota bacterium]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig132.160 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2A4M9	GTPase Der OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) OX=457570 GN=der PE=3 SV=1
C4ZD63	GTPase Der OS=Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990) OX=515619 GN=der PE=3 SV=1
B8G2P9	GTPase Der OS=Desulfitobacterium hafniense (strain DSM 10664 / DCB-2) OX=272564 GN=der PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012271 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF13419 all species →	HAD_2	Haloacid dehalogenase-like hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR016484 all species →	Family	GTPase Der	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR041492 all species →	Family	Haloacid dehalogenase-like hydrolase	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43834 all species →	GTPASE DER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12853	SNU114; 114 kDa U5 small nuclear ribonucleoprotein component	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.