Detailed information of evm.model.Contig132.233 in Hemicorallium imperiale

Genomic Location: Contig132:568383...569681
NR annotation: MBR0319046.1, histidine--tRNA ligase [Spirochaetia bacterium]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig132.233 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P60920Histidine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104) OX=243275 GN=hisS PE=3 SV=1
Q7VF68Histidine--tRNA ligase OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) OX=235279 GN=hisS PE=3 SV=1
Q7M8S6Histidine--tRNA ligase OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W) OX=273121 GN=hisS PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002441 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13393
all species →		tRNA-synt_HisHistidyl-tRNA synthetaseDomainInterproscan
PF03129
all species →		HGTP_anticodonAnticodon binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015807
all species →		FamilyHistidine-tRNA ligaseInterproscan
IPR006195
all species →		DomainAminoacyl-tRNA synthetase, class IIInterproscan
IPR004516
all species →		FamilyHistidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunitInterproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR041715
all species →		DomainClass II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domainInterproscan
IPR004154
all species →		DomainAnticodon-bindingInterproscan
IPR036621
all species →		Homologous_superfamilyAnticodon-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11476
all species →		HISTIDYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004821
all species →		Molecular Functionhistidine-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006427
all species →		Biological Processhistidyl-tRNA aminoacylationInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01892HARS, hisS; histidyl-tRNA synthetaseEC:6.1.1.21
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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