Gene detail

Detailed information of evm.model.Contig132.240 in Hemicorallium imperiale

Genomic Location: Contig132:584698...586020
NR annotation: MCG8479108.1, proline--tRNA ligase [Spirochaetales bacterium]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig132.240 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B4S9D5	Proline--tRNA ligase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) OX=290512 GN=proS PE=3 SV=1
Q8KCD1	Proline--tRNA ligase OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=proS PE=3 SV=1
B3QPX3	Proline--tRNA ligase OS=Chlorobaculum parvum (strain DSM 263 / NCIMB 8327) OX=517417 GN=proS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003201 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09180 all species →	ProRS-C_1	Prolyl-tRNA synthetase, C-terminal	Domain	Interproscan
PF03129 all species →	HGTP_anticodon	Anticodon binding domain	Domain	Interproscan
PF00587 all species →	tRNA-synt_2b	tRNA synthetase class II core domain (G, H, P, S and T)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016061 all species →	Domain	Proline-tRNA ligase, class II, C-terminal	Interproscan
IPR004154 all species →	Domain	Anticodon-binding	Interproscan
IPR036621 all species →	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR017449 all species →	Homologous_superfamily	Prolyl-tRNA synthetase, class II	Interproscan
IPR004499 all species →	Family	Proline-tRNA ligase, class IIa, archaeal-type	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR033721 all species →	Domain	Prolyl-tRNA synthetase, catalytic domain	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR002314 all species →	Domain	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)	Interproscan
IPR002316 all species →	Family	Proline-tRNA ligase, class IIa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43382 all species →	PROLYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004827 all species →	Molecular Function	proline-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006433 all species →	Biological Process	prolyl-tRNA aminoacylation	Interproscan
GO:0017101 all species →	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01881	PARS, proS; prolyl-tRNA synthetase	EC:6.1.1.15	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.