Gene detail

Detailed information of evm.model.Contig132.258 in Hemicorallium imperiale

Genomic Location: Contig132:615808...616602
NR annotation: WGK68330.1, succinate dehydrogenase iron-sulfur subunit [Spirochaetaceae bacterium SP-2023]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig132.258 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q70KF8	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Uromyces fabae OX=55588 GN=SDH2 PE=3 SV=1
Q9ZEA1	Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=sdhB PE=3 SV=1
Q68XS0	Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=sdhB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007003 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13183 all species →	Fer4_8	4Fe-4S dicluster domain	Domain	Interproscan
PF13085 all species →	Fer2_3	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004489 all species →	Family	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	Interproscan
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR009051 all species →	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR017900 all species →	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR050573 all species →	Family	Succinate Dehydrogenase/Fumarate Reductase Iron-Sulfur	Interproscan
IPR025192 all species →	Domain	Succinate dehydogenase/fumarate reductase N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11921 all species →	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0009060 all species →	Biological Process	aerobic respiration	Interproscan
GO:0022904 all species →	Biological Process	respiratory electron transport chain	Interproscan
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00240	sdhB, frdB; succinate dehydrogenase iron-sulfur subunit	EC:1.3.5.1	Carbon fixation pathways in prokaryotes	ko00720	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.