Detailed information of evm.model.Contig132.290 in Hemicorallium imperiale

Genomic Location: Contig132:686250...688178
NR annotation: TVQ17811.1, DNA topoisomerase (ATP-hydrolyzing) subunit B [Spirochaetaceae bacterium]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig132.290 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O87545DNA gyrase subunit B OS=Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104) OX=243275 GN=gyrB PE=1 SV=1
O08399DNA gyrase subunit B OS=Treponema pallidum (strain Nichols) OX=243276 GN=gyrB PE=1 SV=1
P05652DNA gyrase subunit B OS=Bacillus subtilis (strain 168) OX=224308 GN=gyrB PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010595 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02518
all species →		HATPase_cHistidine kinase-, DNA gyrase B-, and HSP90-like ATPaseDomainInterproscan
PF00204
all species →		DNA_gyraseBDNA gyrase BDomainInterproscan
PF01751
all species →		ToprimToprim domainFamilyInterproscan
PF00986
all species →		DNA_gyraseB_CDNA gyrase B subunit, carboxyl terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001241
all species →		FamilyDNA topoisomerase, type IIAInterproscan
IPR003594
all species →		DomainHistidine kinase/HSP90-like ATPaseInterproscan
IPR036890
all species →		Homologous_superfamilyHistidine kinase/HSP90-like ATPase superfamilyInterproscan
IPR013506
all species →		DomainDNA topoisomerase, type IIA, subunit B, domain 2Interproscan
IPR018522
all species →		Conserved_siteDNA topoisomerase, type IIA, conserved siteInterproscan
IPR013759
all species →		Homologous_superfamilyDNA topoisomerase, type IIA, subunit B, C-terminalInterproscan
IPR020568
all species →		Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR000565
all species →		FamilyDNA topoisomerase, type IIA, subunit BInterproscan
IPR006171
all species →		DomainTOPRIM domainInterproscan
IPR014721
all species →		Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR002288
all species →		DomainDNA gyrase B subunit, C-terminalInterproscan
IPR013760
all species →		Homologous_superfamilyDNA topoisomerase, type IIA-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45866
all species →		DNA GYRASE/TOPOISOMERASE SUBUNIT BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003918
all species →		Molecular FunctionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006265
all species →		Biological ProcessDNA topological changeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02470gyrB; DNA gyrase subunit BEC:5.6.2.2
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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