Detailed information of evm.model.Contig132.342 in Hemicorallium imperiale

Genomic Location: Contig132:788130...788968
NR annotation: XP_011861219.1, PREDICTED: 39S ribosomal protein L13, mitochondrial-like [Vollenhovia emeryi]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig132.342 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B2A4Q6Large ribosomal subunit protein uL13 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) OX=457570 GN=rplM PE=3 SV=1
C3K6E1Large ribosomal subunit protein uL13 OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=rplM PE=3 SV=1
C0ZIL3Large ribosomal subunit protein uL13 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) OX=358681 GN=rplM PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008178 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00380
all species →		Ribosomal_S9Ribosomal protein S9/S16FamilyInterproscan
PF00572
all species →		Ribosomal_L13Ribosomal protein L13FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020574
all species →		Conserved_siteSmall ribosomal subunit protein uS9, conserved siteInterproscan
IPR000754
all species →		FamilySmall ribosomal subunit protein uS9Interproscan
IPR005822
all species →		FamilyLarge ribosomal subunit protein uL13Interproscan
IPR036899
all species →		Homologous_superfamilyLarge ribosomal subunit protein uL13 superfamilyInterproscan
IPR005823
all species →		FamilyLarge ribosomal subunit protein uL13, bacterial-typeInterproscan
IPR020568
all species →		Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11545
all species →		RIBOSOMAL PROTEIN L13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0017148
all species →		Biological Processnegative regulation of translationInterproscan
GO:0022625
all species →		Cellular Componentcytosolic large ribosomal subunitInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02996RP-S9, MRPS9, rpsI; small subunit ribosomal protein S9-Ribosomeko03011deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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