Detailed information of evm.model.Contig132.442 in Hemicorallium imperiale

Genomic Location: Contig132:1017725...1019122
NR annotation: NNM55388.1, tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB [Spirochaetales bacterium]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig132.442 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3ACA4tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=miaB PE=3 SV=1
A7GE46tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) OX=441772 GN=miaB PE=3 SV=1
Q895H1tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Clostridium tetani (strain Massachusetts / E88) OX=212717 GN=miaB PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0012304 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00919
all species →		UPF0004Uncharacterized protein family UPF0004FamilyInterproscan
PF04055
all species →		Radical_SAMRadical SAM superfamilyDomainInterproscan
PF01938
all species →		TRAMTRAM domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006638
all species →		DomainElp3/MiaA/NifB-like, radical SAM core domainInterproscan
IPR007197
all species →		DomainRadical SAMInterproscan
IPR002792
all species →		DomainTRAM domainInterproscan
IPR005839
all species →		FamilyMethylthiotransferaseInterproscan
IPR038135
all species →		Homologous_superfamilyMethylthiotransferase, N-terminal domain superfamilyInterproscan
IPR023404
all species →		Homologous_superfamilyRadical SAM, alpha/beta horseshoeInterproscan
IPR020612
all species →		Conserved_siteMethylthiotransferase, conserved siteInterproscan
IPR013848
all species →		DomainMethylthiotransferase, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43020
all species →		CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0051536
all species →		Molecular Functioniron-sulfur cluster bindingInterproscan
GO:0006400
all species →		Biological ProcesstRNA modificationInterproscan
GO:0016740
all species →		Molecular Functiontransferase activityInterproscan
GO:0051539
all species →		Molecular Function4 iron, 4 sulfur cluster bindingInterproscan
GO:0035596
all species →		Molecular Functionmethylthiotransferase activityInterproscan
GO:0035600
all species →		Biological ProcesstRNA methylthiolationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06168miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthaseEC:2.8.4.3
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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