Gene detail

Detailed information of evm.model.Contig132.513 in Hemicorallium imperiale

Genomic Location: Contig132:1185352...1186827
NR annotation: TVQ25085.1, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Spirochaetaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q8AA22	Uncharacterized RNA methyltransferase BT_0643 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=BT_0643 PE=3 SV=1
Q7MVG9	Uncharacterized RNA methyltransferase PG_1095 OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) OX=242619 GN=PG_1095 PE=3 SV=1
Q892Z2	Uncharacterized RNA methyltransferase CTC_01941 OS=Clostridium tetani (strain Massachusetts / E88) OX=212717 GN=CTC_01941 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05958	tRNA_U5-meth_tr	tRNA (Uracil-5-)-methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010280	Family	(Uracil-5)-methyltransferase family	Interproscan
IPR030390	Active_site	RNA methyltransferase TrmA, active site	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR030391	Conserved_site	RNA methyltransferase TrmA, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11061	RNA M5U METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0070041	Molecular Function	rRNA (uridine-C5-)-methyltransferase activity	Interproscan
GO:0070475	Biological Process	rRNA base methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03215	rumA; 23S rRNA (uracil1939-C5)-methyltransferase	EC:2.1.1.190	Ribosome biogenesis	ko03009	deepkoala