Gene detail

Detailed information of evm.model.Contig133.140 in Hemicorallium imperiale

Genomic Location: Contig133:291860...292972
NR annotation: WP_244382838.1, glycine cleavage system aminomethyltransferase GcvT [Sphingomicrobium astaxanthinifaciens]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig133.140 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54DD3	Aminomethyltransferase, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=gcvT PE=3 SV=1
O65396	Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GDCST PE=2 SV=1
O14110	Probable aminomethyltransferase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=gcv1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004975 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08669 all species →	GCV_T_C	Glycine cleavage T-protein C-terminal barrel domain	Domain	Interproscan
PF01571 all species →	GCV_T	Aminomethyltransferase folate-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013977 all species →	Domain	Glycine cleavage T-protein, C-terminal barrel domain	Interproscan
IPR028896 all species →	Family	Aminomethyltransferase-like	Interproscan
IPR006222 all species →	Domain	Aminomethyltransferase, folate-binding domain	Interproscan
IPR027266 all species →	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR029043 all species →	Homologous_superfamily	Glycine cleavage T-protein/YgfZ, C-terminal	Interproscan
IPR006223 all species →	Family	Glycine cleavage system T protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43757 all species →	AMINOMETHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004047 all species →	Molecular Function	aminomethyltransferase activity	Interproscan
GO:0006546 all species →	Biological Process	glycine catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00605	gcvT, AMT; glycine cleavage system T protein (aminomethyltransferase)	EC:2.1.2.10	One carbon pool by folate	ko00670	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.