Detailed information of evm.model.Contig133.142 in Hemicorallium imperiale

Genomic Location: Contig133:299598...302396
NR annotation: WP_188257784.1, aminomethyl-transferring glycine dehydrogenase [Pseudaminobacter soli]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig133.142 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q98LT6Glycine dehydrogenase (decarboxylating) OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=gcvP PE=3 SV=1
A9WZ23Glycine dehydrogenase (decarboxylating) OS=Brucella suis (strain ATCC 23445 / NCTC 10510) OX=470137 GN=gcvP PE=3 SV=1
C0RLN1Glycine dehydrogenase (decarboxylating) OS=Brucella melitensis biotype 2 (strain ATCC 23457) OX=546272 GN=gcvP PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002709 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02347
all species →		GDC-PGlycine cleavage system P-proteinDomainInterproscan
PF21478
all species →		GcvP2_CGlycine dehydrogenase, C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020581
all species →		FamilyGlycine cleavage system P proteinInterproscan
IPR049315
all species →		DomainGlycine cleavage system P-protein, N-terminal domainInterproscan
IPR015424
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR015421
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR049316
all species →		DomainGlycine dehydrogenase, C-terminal domainInterproscan
IPR003437
all species →		FamilyGlycine dehydrogenase (decarboxylating)Interproscan
IPR015422
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11773
all species →		GLYCINE DEHYDROGENASE, DECARBOXYLATINGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004375
all species →		Molecular Functionglycine dehydrogenase (decarboxylating) activityInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0005960
all species →		Cellular Componentglycine cleavage complexInterproscan
GO:0006546
all species →		Biological Processglycine catabolic processInterproscan
GO:0016594
all species →		Molecular Functionglycine bindingInterproscan
GO:0019464
all species →		Biological Processglycine decarboxylation via glycine cleavage systemInterproscan
GO:0030170
all species →		Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0006544
all species →		Biological Processglycine metabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00281GLDC, gcvP; glycine cleavage system P protein (glycine dehydrogenase)EC:1.4.4.2
Lipoic acid metabolismko00785deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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