Detailed information of evm.model.Contig133.194 in Hemicorallium imperiale

Genomic Location: Contig133:421737...422645
NR annotation: WP_014455699.1, pyridoxal 5'-phosphate synthase lyase subunit PdxS [Spirochaeta africana]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig133.194 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B0KAS1Pyridoxal 5'-phosphate synthase subunit PdxS OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=pdxS PE=3 SV=1
B8E121Pyridoxal 5'-phosphate synthase subunit PdxS OS=Dictyoglomus turgidum (strain DSM 6724 / Z-1310) OX=515635 GN=pdxS PE=3 SV=1
B0K4N7Pyridoxal 5'-phosphate synthase subunit PdxS OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=pdxS PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006083 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01680
all species →		SOR_SNZSOR/SNZ familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001852
all species →		FamilyPyridoxal 5'-phosphate synthase subunit PdxS/SNZInterproscan
IPR011060
all species →		Homologous_superfamilyRibulose-phosphate binding barrelInterproscan
IPR013785
all species →		Homologous_superfamilyAldolase-type TIM barrelInterproscan
IPR033755
all species →		DomainPdxS/SNZ N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31829
all species →		PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0042819
all species →		Biological Processvitamin B6 biosynthetic processInterproscan
GO:0042823
all species →		Biological Processpyridoxal phosphate biosynthetic processInterproscan
GO:0006520
all species →		Biological Processamino acid metabolic processInterproscan
GO:0008615
all species →		Biological Processpyridoxine biosynthetic processInterproscan
GO:0016843
all species →		Molecular Functionamine-lyase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06215pdxS, pdx1; pyridoxal 5'-phosphate synthase pdxS subunitEC:4.3.3.6
Vitamin B6 metabolismko00750deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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