Genomic Location: Contig133:422720...423559
NR annotation: MBO4509070.1, YggS family pyridoxal phosphate-dependent enzyme [Spirochaetaceae bacterium]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Contig133.195 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P52055 | Pyridoxal phosphate homeostasis protein OS=Vibrio alginolyticus OX=663 PE=3 SV=1 |
| Q9CPD5 | Pyridoxal phosphate homeostasis protein OS=Pasteurella multocida (strain Pm70) OX=272843 GN=PM0112 PE=3 SV=1 |
| Q9KUQ4 | Pyridoxal phosphate homeostasis protein OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=VC_0461 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004666 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01168 all species → | Ala_racemase_N | Alanine racemase, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029066 all species → | Homologous_superfamily | PLP-binding barrel | Interproscan |
| IPR011078 all species → | Family | Pyridoxal phosphate homeostasis protein | Interproscan |
| IPR001608 all species → | Domain | Alanine racemase, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10146 all species → | PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0030170 all species → | Molecular Function | pyridoxal phosphate binding | Interproscan |
| GO:0005622 all species → | Cellular Component | intracellular anatomical structure | Interproscan |
evm.model.Contig133.195.Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
