Gene detail

Detailed information of evm.model.Contig133.196 in Hemicorallium imperiale

Genomic Location: Contig133:424036...425028
NR annotation: TVR01829.1, RluA family pseudouridine synthase [Spirochaetaceae bacterium]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig133.196 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70870	Ribosomal large subunit pseudouridine synthase D OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=rluD PE=3 SV=2
O50310	Uncharacterized RNA pseudouridine synthase Cpar_0723 OS=Chlorobaculum parvum (strain DSM 263 / NCIMB 8327) OX=517417 GN=Cpar_0723 PE=3 SV=1
Q45480	Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168) OX=224308 GN=ylyB PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003100 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01479 all species →	S4	S4 domain	Domain	Interproscan
PF00849 all species →	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002942 all species →	Domain	RNA-binding S4 domain	Interproscan
IPR006225 all species →	Family	Pseudouridine synthase, RluC/RluD	Interproscan
IPR036986 all species →	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR050188 all species →	Family	RluA Pseudouridine Synthase	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR006145 all species →	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600 all species →	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Contig133.196.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.