Gene detail

Detailed information of evm.model.Contig133.196 in Hemicorallium imperiale

Genomic Location: Contig133:424036...425028
NR annotation: TVR01829.1, RluA family pseudouridine synthase [Spirochaetaceae bacterium]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P70870	Ribosomal large subunit pseudouridine synthase D OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=rluD PE=3 SV=2
O50310	Uncharacterized RNA pseudouridine synthase Cpar_0723 OS=Chlorobaculum parvum (strain DSM 263 / NCIMB 8327) OX=517417 GN=Cpar_0723 PE=3 SV=1
Q45480	Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168) OX=224308 GN=ylyB PE=3 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01479	S4	S4 domain	Domain	Interproscan
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002942	Domain	RNA-binding S4 domain	Interproscan
IPR006225	Family	Pseudouridine synthase, RluC/RluD	Interproscan
IPR036986	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR050188	Family	RluA Pseudouridine Synthase	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan