Detailed information of evm.model.Contig133.252 in Hemicorallium imperiale

Genomic Location: Contig133:538811...540613
NR annotation: TVQ25575.1, DNA primase [Spirochaetaceae bacterium]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig133.252 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O83505DNA primase OS=Treponema pallidum (strain Nichols) OX=243276 GN=dnaG PE=3 SV=1
Q9KD44DNA primase OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=dnaG PE=3 SV=1
P33655DNA primase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W) OX=272562 GN=dnaG PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0014964 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13155
all species →		Toprim_2Toprim-likeFamilyInterproscan
PF01807
all species →		zf-CHC2CHC2 zinc fingerDomainInterproscan
PF08275
all species →		DNAG_NDNA primase catalytic core, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006295
all species →		DomainDNA primase, DnaGInterproscan
IPR006171
all species →		DomainTOPRIM domainInterproscan
IPR036977
all species →		Homologous_superfamilyDNA Primase, CHC2-type zinc fingerInterproscan
IPR030846
all species →		FamilyDNA primase DnaG, bacteriaInterproscan
IPR002694
all species →		DomainZinc finger, CHC2-typeInterproscan
IPR037068
all species →		Homologous_superfamilyDNA primase, catalytic core, N-terminal domain superfamilyInterproscan
IPR050219
all species →		FamilyDnaG PrimaseInterproscan
IPR013264
all species →		DomainDNA primase DNAG, catalytic core, N-terminalInterproscan
IPR034151
all species →		DomainBacterial DnaG primase, TOPRIM domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30313
all species →		DNA PRIMASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003896
all species →		Molecular FunctionDNA primase activityInterproscan
GO:0006269
all species →		Biological ProcessDNA replication, synthesis of primerInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006260
all species →		Biological ProcessDNA replicationInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02316dnaG; DNA primaseEC:2.7.7.101
DNA replication proteinsko03032deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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