Detailed information of evm.model.Contig133.262 in Hemicorallium imperiale

Genomic Location: Contig133:553554...554885
NR annotation: WP_083052545.1, signal recognition particle protein [Marispirochaeta aestuarii]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig133.262 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P37105Signal recognition particle protein OS=Bacillus subtilis (strain 168) OX=224308 GN=ffh PE=1 SV=1
O67615Signal recognition particle protein OS=Aquifex aeolicus (strain VF5) OX=224324 GN=ffh PE=3 SV=1
P0AGD9Signal recognition particle protein OS=Escherichia coli O157:H7 OX=83334 GN=ffh PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003632 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02978
all species →		SRP_SPBSignal peptide binding domainDomainInterproscan
PF02881
all species →		SRP54_NSRP54-type protein, helical bundle domainDomainInterproscan
PF00448
all species →		SRP54SRP54-type protein, GTPase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003593
all species →		DomainAAA+ ATPase domainInterproscan
IPR000897
all species →		DomainSignal recognition particle, SRP54 subunit, GTPase domainInterproscan
IPR004780
all species →		FamilySignal recognition particle proteinInterproscan
IPR004125
all species →		DomainSignal recognition particle, SRP54 subunit, M-domainInterproscan
IPR036225
all species →		Homologous_superfamilySRP/SRP receptor, N-terminalInterproscan
IPR013822
all species →		DomainSignal recognition particle SRP54, helical bundleInterproscan
IPR036891
all species →		Homologous_superfamilySignal recognition particle, SRP54 subunit, M-domain superfamilyInterproscan
IPR042101
all species →		Homologous_superfamilySignal recognition particle SRP54, N-terminal domain superfamilyInterproscan
IPR022941
all species →		FamilySignal recognition particle, SRP54 subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11564
all species →		SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016887
all species →		Molecular FunctionATP hydrolysis activityInterproscan
GO:0005525
all species →		Molecular FunctionGTP bindingInterproscan
GO:0006614
all species →		Biological ProcessSRP-dependent cotranslational protein targeting to membraneInterproscan
GO:0003924
all species →		Molecular FunctionGTPase activityInterproscan
GO:0048500
all species →		Cellular Componentsignal recognition particleInterproscan
GO:0008312
all species →		Molecular Function7S RNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03106SRP54, ffh; signal recognition particle subunit SRP54EC:3.6.5.4
Secretion systemko02044deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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