Genomic Location: Contig133:784687...786156
NR annotation: WP_159520197.1, aldehyde dehydrogenase family protein [Erysipelothrix urinaevulpis]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Contig133.363 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q63B74 | Malonate-semialdehyde dehydrogenase 2 OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=iolA2 PE=3 SV=1 |
| A0REB5 | Malonate-semialdehyde dehydrogenase 2 OS=Bacillus thuringiensis (strain Al Hakam) OX=412694 GN=iolA2 PE=3 SV=2 |
| Q6HIK3 | Malonate-semialdehyde dehydrogenase 2 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309 GN=iolA2 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004065 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00171 all species → | Aldedh | Aldehyde dehydrogenase family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016163 all species → | Homologous_superfamily | Aldehyde dehydrogenase, C-terminal | Interproscan |
| IPR015590 all species → | Domain | Aldehyde dehydrogenase domain | Interproscan |
| IPR016161 all species → | Homologous_superfamily | Aldehyde/histidinol dehydrogenase | Interproscan |
| IPR016162 all species → | Homologous_superfamily | Aldehyde dehydrogenase, N-terminal | Interproscan |
| IPR010061 all species → | Family | Methylmalonate-semialdehyde dehydrogenase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43866 all species → | MALONATE-SEMIALDEHYDE DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016620 all species → | Molecular Function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0004491 all species → | Molecular Function | methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity | Interproscan |
| GO:0006210 all species → | Biological Process | thymine catabolic process | Interproscan |
| GO:0006574 all species → | Biological Process | valine catabolic process | Interproscan |
| GO:0018478 all species → | Molecular Function | malonate-semialdehyde dehydrogenase (acetylating) activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00140 | mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase | EC:1.2.1.18 EC:1.2.1.27 | beta-Alanine metabolism | ko00410 | deepkoala |
Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
