Detailed information of evm.model.Contig133.382 in Hemicorallium imperiale

Genomic Location: Contig133:822925...823682
NR annotation: MBW2171370.1, 30S ribosomal protein S13 [Deltaproteobacteria bacterium]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig133.382 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q73PL0Small ribosomal subunit protein uS13 OS=Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104) OX=243275 GN=rpsM PE=3 SV=1
A1QZT6Small ribosomal subunit protein uS13 OS=Borrelia turicatae (strain 91E135) OX=314724 GN=rpsM PE=3 SV=1
O83240Small ribosomal subunit protein uS13 OS=Treponema pallidum (strain Nichols) OX=243276 GN=rpsM PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005576 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00411
all species →		Ribosomal_S11Ribosomal protein S11FamilyInterproscan
PF00416
all species →		Ribosomal_S13Ribosomal protein S13/S18FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036967
all species →		Homologous_superfamilySmall ribosomal subunit protein uS11 superfamilyInterproscan
IPR019980
all species →		FamilySmall ribosomal subunit protein uS13, bacterial-typeInterproscan
IPR018269
all species →		Conserved_siteSmall ribosomal subunit protein uS13, conserved siteInterproscan
IPR018102
all species →		Conserved_siteSmall ribosomal subunit protein uS11, conserved siteInterproscan
IPR010979
all species →		Homologous_superfamilySmall ribosomal subunit protein uS13-like, H2THInterproscan
IPR001892
all species →		FamilySmall ribosomal subunit protein uS13Interproscan
IPR027437
all species →		Homologous_superfamilySmall ribosomal subunit protein uS13, C-terminalInterproscan
IPR001971
all species →		FamilySmall ribosomal subunit protein uS11Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10871
all species →		30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0015935
all species →		Cellular Componentsmall ribosomal subunitInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig133.382.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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