Detailed information of evm.model.Contig133.390 in Hemicorallium imperiale

Genomic Location: Contig133:832509...833153
NR annotation: WP_014454653.1, 50S ribosomal protein L4 [Spirochaeta africana]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig133.390 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q661E2Large ribosomal subunit protein uL4 OS=Borrelia garinii subsp. bavariensis (strain ATCC BAA-2496 / DSM 23469 / PBi) OX=290434 GN=rplD PE=3 SV=1
B7J244Large ribosomal subunit protein uL4 OS=Borreliella burgdorferi (strain ZS7) OX=445985 GN=rplD PE=3 SV=1
P94268Large ribosomal subunit protein uL4 OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=rplD PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004676 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00573
all species →		Ribosomal_L4Ribosomal protein L4/L1 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023574
all species →		Homologous_superfamilyLarge ribosomal subunit protein uL4 domain superfamilyInterproscan
IPR013005
all species →		FamilyLarge ribosomal subunit protein uL4-likeInterproscan
IPR002136
all species →		FamilyLarge ribosomal subunit protein uL4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10746
all species →		50S RIBOSOMAL PROTEIN L4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02926RP-L4, MRPL4, rplD; large subunit ribosomal protein L4-Ribosomeko03011deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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