Gene detail

Detailed information of evm.model.Contig133.419 in Hemicorallium imperiale

Genomic Location: Contig133:893022...893614
NR annotation: WP_028975340.1, 50S ribosomal protein L20 [Spirochaeta cellobiosiphila]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig133.419 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q72PL0	Large ribosomal subunit protein bL20 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) OX=267671 GN=rplT PE=3 SV=1
Q8F6Q7	Large ribosomal subunit protein bL20 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) OX=189518 GN=rplT PE=3 SV=1
B3ERW1	Large ribosomal subunit protein bL20 OS=Amoebophilus asiaticus (strain 5a2) OX=452471 GN=rplT PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005439 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00453 all species →	Ribosomal_L20	Ribosomal protein L20	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005813 all species →	Family	Large ribosomal subunit protein bL20	Interproscan
IPR037229 all species →	Homologous_superfamily	Large ribosomal subunit protein bL35 superfamily	Interproscan
IPR035566 all species →	Homologous_superfamily	Ribosomal protein bL20, C-terminal	Interproscan
IPR049946 all species →	Conserved_site	Large ribosomal subunit protein bL20, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10986 all species →	39S RIBOSOMAL PROTEIN L20	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02887	RP-L20, MRPL20, rplT; large subunit ribosomal protein L20	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.