Gene detail

Detailed information of evm.model.Contig133.44 in Hemicorallium imperiale

Genomic Location: Contig133:93256...93681
NR annotation: MBN2625750.1, 50S ribosomal protein L11 [Spirochaetales bacterium]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig133.44 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P62443	Large ribosomal subunit protein uL11 OS=Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104) OX=243275 GN=rplK PE=3 SV=1
B0KCI8	Large ribosomal subunit protein uL11 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=rplK PE=3 SV=1
B0K5G4	Large ribosomal subunit protein uL11 OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=rplK PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004091 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03946 all species →	Ribosomal_L11_N	Ribosomal protein L11, N-terminal domain	Domain	Interproscan
PF00298 all species →	Ribosomal_L11	Ribosomal protein L11, RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020784 all species →	Domain	Large ribosomal subunit protein uL11, N-terminal	Interproscan
IPR000911 all species →	Family	Ribosomal protein uL11	Interproscan
IPR036769 all species →	Homologous_superfamily	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Interproscan
IPR036796 all species →	Homologous_superfamily	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Interproscan
IPR006519 all species →	Family	Large ribosomal subunit protein uL11, bacterial-type	Interproscan
IPR020785 all species →	Conserved_site	Large ribosomal subunit protein uL11, conserved site	Interproscan
IPR020783 all species →	Domain	Large ribosomal subunit protein uL11, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11661 all species →	60S RIBOSOMAL PROTEIN L12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan
GO:0070180 all species →	Molecular Function	large ribosomal subunit rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02867	RP-L11, MRPL11, rplK; large subunit ribosomal protein L11	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.