Gene detail

Detailed information of evm.model.Contig133.47 in Hemicorallium imperiale

Genomic Location: Contig133:94986...95369
NR annotation: WP_275802008.1, 50S ribosomal protein L7/L12 [Desulfurivibrio alkaliphilus]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig133.47 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8FEU2	Large ribosomal subunit protein bL12 OS=Desulfatibacillum aliphaticivorans OX=218208 GN=rplL PE=3 SV=1
C5CGE0	Large ribosomal subunit protein bL12 OS=Kosmotoga olearia (strain ATCC BAA-1733 / DSM 21960 / TBF 19.5.1) OX=521045 GN=rplL PE=3 SV=1
A8ZV50	Large ribosomal subunit protein bL12 OS=Desulfosudis oleivorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=rplL PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00542 all species →	Ribosomal_L12	Ribosomal protein L7/L12 C-terminal domain	Domain	Interproscan
PF16320 all species →	Ribosomal_L12_N	Ribosomal protein L7/L12 dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014719 all species →	Homologous_superfamily	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Interproscan
IPR036235 all species →	Homologous_superfamily	Large ribosomal subunit protein bL12, oligomerization domain superfamily	Interproscan
IPR013823 all species →	Domain	Large ribosomal subunit protein bL12, C-terminal	Interproscan
IPR000206 all species →	Family	Large ribosomal subunit protein bL12	Interproscan
IPR008932 all species →	Domain	Large ribosomal subunit protein bL12, oligomerization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45987 all species →	39S RIBOSOMAL PROTEIN L12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02935	RP-L7, MRPL12, rplL; large subunit ribosomal protein L7/L12	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.