Detailed information of evm.model.Contig133.480 in Hemicorallium imperiale

Genomic Location: Contig133:1016761...1019268
NR annotation: WP_024267142.1, valine--tRNA ligase [Salinispira pacifica]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig133.480 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q73MZ2Valine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104) OX=243275 GN=valS PE=3 SV=1
Q9X2D7Valine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=valS PE=3 SV=1
O83998Valine--tRNA ligase OS=Treponema pallidum (strain Nichols) OX=243276 GN=valS PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002985 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08264
all species →		Anticodon_1Anticodon-binding domain of tRNA ligaseDomainInterproscan
PF00133
all species →		tRNA-synt_1tRNA synthetases class I (I, L, M and V)DomainInterproscan
PF10458
all species →		Val_tRNA-synt_CValyl tRNA synthetase tRNA binding armDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009008
all species →		Homologous_superfamilyValyl/Leucyl/Isoleucyl-tRNA synthetase, editing domainInterproscan
IPR010978
all species →		Homologous_superfamilyClass I and II aminoacyl-tRNA synthetase, tRNA-binding armInterproscan
IPR002303
all species →		FamilyValine-tRNA ligaseInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR009080
all species →		Homologous_superfamilyAminoacyl-tRNA synthetase, class Ia, anticodon-bindingInterproscan
IPR013155
all species →		DomainMethionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-bindingInterproscan
IPR033705
all species →		DomainValyl tRNA synthetase, anticodon-binding domainInterproscan
IPR037118
all species →		Homologous_superfamilyValyl-tRNA synthetase, tRNA-binding arm superfamilyInterproscan
IPR002300
all species →		DomainAminoacyl-tRNA synthetase, class IaInterproscan
IPR019499
all species →		DomainValyl-tRNA synthetase, tRNA-binding armInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11946
all species →		VALYL-TRNA SYNTHETASESInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0002161
all species →		Molecular Functionaminoacyl-tRNA editing activityInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004832
all species →		Molecular Functionvaline-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006438
all species →		Biological Processvalyl-tRNA aminoacylationInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01873VARS, valS; valyl-tRNA synthetaseEC:6.1.1.9
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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