Genomic Location: Contig133:1050314...1051230
NR annotation: MBN2626931.1, imidazoleglycerol-phosphate dehydratase HisB [Spirochaetales bacterium]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Contig133.495 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A7Z965 | Imidazoleglycerol-phosphate dehydratase OS=Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42) OX=326423 GN=hisB PE=3 SV=1 |
| A8FHR2 | Imidazoleglycerol-phosphate dehydratase OS=Bacillus pumilus (strain SAFR-032) OX=315750 GN=hisB PE=3 SV=1 |
| Q5FTN7 | Imidazoleglycerol-phosphate dehydratase OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=hisB PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0011292 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00475 all species → | IGPD | Imidazoleglycerol-phosphate dehydratase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR038494 all species → | Homologous_superfamily | Imidazole glycerol phosphate dehydratase domain superfamily | Interproscan |
| IPR020568 all species → | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| IPR000807 all species → | Family | Imidazoleglycerol-phosphate dehydratase | Interproscan |
| IPR020565 all species → | Conserved_site | Imidazoleglycerol-phosphate dehydratase, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23133 all species → | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000105 all species → | Biological Process | L-histidine biosynthetic process | Interproscan |
| GO:0004424 all species → | Molecular Function | imidazoleglycerol-phosphate dehydratase activity | Interproscan |
evm.model.Contig133.495.Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
