Detailed information of evm.model.Contig133.500 in Hemicorallium imperiale

Genomic Location: Contig133:1063394...1064227
NR annotation: SLM12379.1, Ribosomal RNA small subunit methyltransferase A [uncultured spirochete]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig133.500 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2YBP5Ribosomal RNA small subunit methyltransferase A OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849 / C 71) OX=323848 GN=rsmA PE=3 SV=1
Q9I5U5Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rsmA PE=3 SV=1
Q1GZB8Ribosomal RNA small subunit methyltransferase A OS=Methylobacillus flagellatus (strain ATCC 51484 / DSM 6875 / VKM B-1610 / KT) OX=265072 GN=rsmA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004425 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00398
all species →		RrnaADRibosomal RNA adenine dimethylaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023165
all species →		Homologous_superfamilyrRNA adenine dimethylase-like, C-terminalInterproscan
IPR020598
all species →		DomainRibosomal RNA adenine methylase transferase, N-terminalInterproscan
IPR029063
all species →		Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR001737
all species →		FamilyRibosomal RNA adenine methyltransferase KsgA/ErmInterproscan
IPR011530
all species →		FamilyRibosomal RNA adenine dimethylaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11727
all species →		DIMETHYLADENOSINE TRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000154
all species →		Biological ProcessrRNA modificationInterproscan
GO:0000179
all species →		Molecular FunctionrRNA (adenine-N6,N6-)-dimethyltransferase activityInterproscan
GO:0006364
all species →		Biological ProcessrRNA processingInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0031167
all species →		Biological ProcessrRNA methylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig133.500.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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