Gene detail

Detailed information of evm.model.Contig133.72 in Hemicorallium imperiale

Genomic Location: Contig133:148963...151277
NR annotation: TVR59210.1, phospho-sugar mutase [Spirochaetaceae bacterium]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig133.72 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18159	Phosphoglucomutase OS=Bacillus subtilis (strain 168) OX=224308 GN=pgcA PE=1 SV=3
Q2FE11	Phosphoglucomutase OS=Staphylococcus aureus (strain USA300) OX=367830 GN=pgcA PE=3 SV=2
Q2FVC1	Phosphoglucomutase OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=pgcA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003003 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02880 all species →	PGM_PMM_III	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III	Domain	Interproscan
PF02879 all species →	PGM_PMM_II	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II	Domain	Interproscan
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan
PF02878 all species →	PGM_PMM_I	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR016066 all species →	Conserved_site	Alpha-D-phosphohexomutase, conserved site	Interproscan
IPR016055 all species →	Homologous_superfamily	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	Interproscan
IPR005846 all species →	Domain	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	Interproscan
IPR005845 all species →	Domain	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR005841 all species →	Family	Alpha-D-phosphohexomutase superfamily	Interproscan
IPR005844 all species →	Domain	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	Interproscan
IPR006054 all species →	Domain	DNA polymerase III epsilon subunit, exonuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45745 all species →	PHOSPHOMANNOMUTASE 45A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016868 all species →	Molecular Function	intramolecular phosphotransferase activity	Interproscan
GO:0006166 all species →	Biological Process	purine ribonucleoside salvage	Interproscan
GO:0008973 all species →	Molecular Function	phosphopentomutase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Contig133.72.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.