Genomic Location: Contig136:324600...326010
NR annotation: CDW59245.1, CbiA and ParBc and KorB domain containing protein [Trichuris trichiura]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Contig136.132 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9K5N0 | Sporulation initiation inhibitor protein Soj OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=soj PE=3 SV=1 |
| P37522 | Sporulation initiation inhibitor protein Soj OS=Bacillus subtilis (strain 168) OX=224308 GN=soj PE=1 SV=1 |
| P0CAV7 | Chromosome partitioning protein ParA OS=Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) OX=190650 GN=parA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0013638 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17762 all species → | HTH_ParB | HTH domain found in ParB protein | Domain | Interproscan |
| PF02195 all species → | ParBc | ParB/Sulfiredoxin domain | Family | Interproscan |
| PF13614 all species → | AAA_31 | AAA domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041468 all species → | Domain | ParB/Spo0J, HTH domain | Interproscan |
| IPR050678 all species → | Family | DNA Partitioning ATPase | Interproscan |
| IPR004437 all species → | Domain | ParB/RepB/Spo0J partition protein | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR003115 all species → | Domain | ParB/Sulfiredoxin | Interproscan |
| IPR001387 all species → | Domain | Cro/C1-type helix-turn-helix domain | Interproscan |
| IPR036086 all species → | Homologous_superfamily | ParB/Sulfiredoxin superfamily | Interproscan |
| IPR025669 all species → | Domain | AAA domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13696 all species → | P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03496 | parA, soj; chromosome partitioning protein | - | Cytoskeleton proteins | ko04812 | deepkoala |
Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
