Detailed information of evm.model.Contig136.140 in Hemicorallium imperiale

Genomic Location: Contig136:344693...345591
NR annotation: KAF5295826.1, hypothetical protein FQA39_LY12999 [Lamprigera yunnana]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig136.140 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6F0K7Large ribosomal subunit protein uL11 OS=Mesoplasma florum (strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1) OX=265311 GN=rplK PE=3 SV=1
Q2ST53Large ribosomal subunit protein uL11 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) OX=340047 GN=rplK PE=3 SV=1
P62437Large ribosomal subunit protein uL11 OS=Mycoplasma mycoides subsp. mycoides SC (strain CCUG 32753 / NCTC 10114 / PG1) OX=272632 GN=rplK PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004091 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00298
all species →
Ribosomal_L11Ribosomal protein L11, RNA binding domainDomainInterproscan
PF00687
all species →
Ribosomal_L1Ribosomal protein L1p/L10e familyDomainInterproscan
PF03946
all species →
Ribosomal_L11_NRibosomal protein L11, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036796
all species →
Homologous_superfamilyLarge ribosomal subunit protein uL11, N-terminal domain superfamilyInterproscan
IPR000911
all species →
FamilyRibosomal protein uL11Interproscan
IPR023674
all species →
Homologous_superfamilyRibosomal protein uL1-likeInterproscan
IPR020783
all species →
DomainLarge ribosomal subunit protein uL11, C-terminalInterproscan
IPR036769
all species →
Homologous_superfamilyLarge ribosomal subunit protein uL11, C-terminal domain superfamilyInterproscan
IPR028364
all species →
FamilyRibosomal protein uL1/ribosomal biogenesis proteinInterproscan
IPR020784
all species →
DomainLarge ribosomal subunit protein uL11, N-terminalInterproscan
IPR020785
all species →
Conserved_siteLarge ribosomal subunit protein uL11, conserved siteInterproscan
IPR006519
all species →
FamilyLarge ribosomal subunit protein uL11, bacterial-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11661
all species →
60S RIBOSOMAL PROTEIN L12Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →
Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →
Cellular ComponentribosomeInterproscan
GO:0006412
all species →
Biological ProcesstranslationInterproscan
GO:0015934
all species →
Cellular Componentlarge ribosomal subunitInterproscan
GO:0070180
all species →
Molecular Functionlarge ribosomal subunit rRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig136.140.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP