Genomic Location: Contig136:350213...352447
NR annotation: MBR1377399.1, pyrimidine-nucleoside phosphorylase [Bacilli bacterium]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Contig136.143 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q2YUL7 | Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 GN=pdp PE=3 SV=1 |
| Q2FEZ3 | Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus (strain USA300) OX=367830 GN=pdp PE=3 SV=2 |
| Q2FWC1 | Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=pdp PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0028334 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00591 all species → | Glycos_transf_3 | Glycosyl transferase family, a/b domain | Family | Interproscan |
| PF00466 all species → | Ribosomal_L10 | Ribosomal protein L10 | Family | Interproscan |
| PF02885 all species → | Glycos_trans_3N | Glycosyl transferase family, helical bundle domain | Domain | Interproscan |
| PF07831 all species → | PYNP_C | Pyrimidine nucleoside phosphorylase C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR043141 all species → | Homologous_superfamily | Large ribosomal subunit protein uL10-like domain superfamily | Interproscan |
| IPR000312 all species → | Domain | Glycosyl transferase, family 3 | Interproscan |
| IPR013102 all species → | Domain | Pyrimidine nucleoside phosphorylase, C-terminal | Interproscan |
| IPR036566 all species → | Homologous_superfamily | Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily | Interproscan |
| IPR000053 all species → | Family | Thymidine/pyrimidine-nucleoside phosphorylase | Interproscan |
| IPR036320 all species → | Homologous_superfamily | Glycosyl transferase family 3, N-terminal domain superfamily | Interproscan |
| IPR001790 all species → | Family | Large ribosomal subunit protein uL10 | Interproscan |
| IPR017459 all species → | Domain | Glycosyl transferase family 3, N-terminal domain | Interproscan |
| IPR035902 all species → | Homologous_superfamily | Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily | Interproscan |
| IPR047865 all species → | Family | Large ribosomal subunit protein uL10, bacterial type | Interproscan |
| IPR022973 all species → | Family | Large ribosomal subunit protein uL10, bacterial | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10515 all species → | THYMIDINE PHOSPHORYLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016757 all species → | Molecular Function | glycosyltransferase activity | Interproscan |
| GO:0006213 all species → | Biological Process | pyrimidine nucleoside metabolic process | Interproscan |
| GO:0016763 all species → | Molecular Function | pentosyltransferase activity | Interproscan |
| GO:0004645 all species → | Molecular Function | 1,4-alpha-oligoglucan phosphorylase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006206 all species → | Biological Process | pyrimidine nucleobase metabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00756 | pdp; pyrimidine-nucleoside phosphorylase | EC:2.4.2.2 | Pyrimidine metabolism | ko00240 | deepkoala |
Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
