Gene detail

Detailed information of evm.model.Contig136.15 in Hemicorallium imperiale

Genomic Location: Contig136:22220...22624
NR annotation: WP_159519342.1, cytidine deaminase [Erysipelothrix urinaevulpis]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig136.15 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9KD53	Cytidine deaminase OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=cdd PE=3 SV=1
P75051	Cytidine deaminase OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1) OX=272634 GN=cdd PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007505 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00383 all species →	dCMP_cyt_deam_1	Cytidine and deoxycytidylate deaminase zinc-binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050202 all species →	Family	Cytidine and Deoxycytidylate Deaminase	Interproscan
IPR002125 all species →	Domain	Cytidine and deoxycytidylate deaminase domain	Interproscan
IPR016192 all species →	Binding_site	APOBEC/CMP deaminase, zinc-binding	Interproscan
IPR016193 all species →	Homologous_superfamily	Cytidine deaminase-like	Interproscan
IPR006262 all species →	Family	Cytidine deaminase, homotetrameric	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11644 all species →	CYTIDINE DEAMINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004126 all species →	Molecular Function	cytidine deaminase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0009972 all species →	Biological Process	cytidine deamination	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01489	cdd, CDA; cytidine deaminase	EC:3.5.4.5	Drug metabolism - other enzymes	ko00983	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.