Detailed information of evm.model.Contig136.178 in Hemicorallium imperiale

Genomic Location: Contig136:396451...397026
NR annotation: MBP9733748.1, aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [Candidatus Omnitrophota bacterium]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig136.178 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B0K742Serine hydroxymethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=glyA PE=3 SV=1
B0K631Serine hydroxymethyltransferase OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=glyA PE=3 SV=1
Q2SFI7Serine hydroxymethyltransferase 1 OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=glyA1 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001347 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00464
all species →		SHMTSerine hydroxymethyltransferaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015422
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR015421
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR015424
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR039429
all species →		DomainSerine hydroxymethyltransferase-like domainInterproscan
IPR049943
all species →		FamilySerine hydroxymethyltransferase-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11680
all species →		SERINE HYDROXYMETHYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004372
all species →		Molecular Functionglycine hydroxymethyltransferase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006565
all species →		Biological ProcessL-serine catabolic processInterproscan
GO:0006730
all species →		Biological Processone-carbon metabolic processInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0019264
all species →		Biological Processglycine biosynthetic process from serineInterproscan
GO:0030170
all species →		Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0046653
all species →		Biological Processtetrahydrofolate metabolic processInterproscan
GO:0046655
all species →		Biological Processfolic acid metabolic processInterproscan
GO:0050897
all species →		Molecular Functioncobalt ion bindingInterproscan
GO:0070905
all species →		Molecular Functionserine bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig136.178.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP