Detailed information of evm.model.Contig136.38 in Hemicorallium imperiale

Genomic Location: Contig136:97276...99459
NR annotation: HHX07605.1, RNA polymerase sigma factor RpoD [Erysipelothrix sp.]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig136.38 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P43344RNA polymerase sigma factor RpoD (Fragment) OS=Serratia marcescens OX=615 GN=rpoD PE=3 SV=1
P0A2E4RNA polymerase sigma factor RpoD OS=Salmonella typhi OX=90370 GN=rpoD PE=3 SV=1
P0A2E3RNA polymerase sigma factor RpoD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rpoD PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0013438 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04539
all species →		Sigma70_r3Sigma-70 region 3FamilyInterproscan
PF04545
all species →		Sigma70_r4Sigma-70, region 4DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR013324
all species →		Homologous_superfamilyRNA polymerase sigma factor, region 3/4-likeInterproscan
IPR007624
all species →		DomainRNA polymerase sigma-70 region 3Interproscan
IPR007630
all species →		DomainRNA polymerase sigma-70 region 4Interproscan
IPR050239
all species →		FamilySigma-70 factor family, RNA polymerase initiation factorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30603
all species →		RNA POLYMERASE SIGMA FACTOR RPOInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006352
all species →		Biological ProcessDNA-templated transcription initiationInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig136.38.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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