Genomic Location: Contig136:100231...105446
NR annotation: WP_146923003.1, DEAD/DEAH box helicase [Alkalibacterium kapii]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Contig136.40 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8Y755 | DEAD-box ATP-dependent RNA helicase CshB OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=cshB PE=2 SV=1 |
| P54475 | DEAD-box ATP-dependent RNA helicase CshB OS=Bacillus subtilis (strain 168) OX=224308 GN=cshB PE=1 SV=1 |
| Q818H2 | DEAD-box ATP-dependent RNA helicase CshB OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=cshB PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000960 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02773 all species → | S-AdoMet_synt_C | S-adenosylmethionine synthetase, C-terminal domain | Domain | Interproscan |
| PF00254 all species → | FKBP_C | FKBP-type peptidyl-prolyl cis-trans isomerase | Domain | Interproscan |
| PF01261 all species → | AP_endonuc_2 | Xylose isomerase-like TIM barrel | Domain | Interproscan |
| PF00270 all species → | DEAD | DEAD/DEAH box helicase | Domain | Interproscan |
| PF00271 all species → | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014001 all species → | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR022630 all species → | Domain | S-adenosylmethionine synthetase, C-terminal | Interproscan |
| IPR036237 all species → | Homologous_superfamily | Xylose isomerase-like superfamily | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR050079 all species → | Family | DEAD box RNA helicase | Interproscan |
| IPR046357 all species → | Homologous_superfamily | Peptidyl-prolyl cis-trans isomerase domain superfamily | Interproscan |
| IPR014014 all species → | Domain | RNA helicase, DEAD-box type, Q motif | Interproscan |
| IPR022636 all species → | Homologous_superfamily | S-adenosylmethionine synthetase superfamily | Interproscan |
| IPR001650 all species → | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR001719 all species → | Family | AP endonuclease 2 | Interproscan |
| IPR018246 all species → | Binding_site | AP endonuclease 2, zinc binding site | Interproscan |
| IPR001179 all species → | Domain | FKBP-type peptidyl-prolyl cis-trans isomerase domain | Interproscan |
| IPR013022 all species → | Domain | Xylose isomerase-like, TIM barrel domain | Interproscan |
| IPR011545 all species → | Domain | DEAD/DEAH box helicase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47959 all species → | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004478 all species → | Molecular Function | methionine adenosyltransferase activity | Interproscan |
| GO:0006556 all species → | Biological Process | S-adenosylmethionine biosynthetic process | Interproscan |
| GO:0003755 all species → | Molecular Function | peptidyl-prolyl cis-trans isomerase activity | Interproscan |
| GO:0003724 all species → | Molecular Function | RNA helicase activity | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
evm.model.Contig136.40.
