Gene detail

Detailed information of evm.model.Contig136.40 in Hemicorallium imperiale

Genomic Location: Contig136:100231...105446
NR annotation: WP_146923003.1, DEAD/DEAH box helicase [Alkalibacterium kapii]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q8Y755	DEAD-box ATP-dependent RNA helicase CshB OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=cshB PE=2 SV=1
P54475	DEAD-box ATP-dependent RNA helicase CshB OS=Bacillus subtilis (strain 168) OX=224308 GN=cshB PE=1 SV=1
Q818H2	DEAD-box ATP-dependent RNA helicase CshB OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=cshB PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02773	S-AdoMet_synt_C	S-adenosylmethionine synthetase, C-terminal domain	Domain	Interproscan
PF00254	FKBP_C	FKBP-type peptidyl-prolyl cis-trans isomerase	Domain	Interproscan
PF01261	AP_endonuc_2	Xylose isomerase-like TIM barrel	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR022630	Domain	S-adenosylmethionine synthetase, C-terminal	Interproscan
IPR036237	Homologous_superfamily	Xylose isomerase-like superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR046357	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR022636	Homologous_superfamily	S-adenosylmethionine synthetase superfamily	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001719	Family	AP endonuclease 2	Interproscan
IPR018246	Binding_site	AP endonuclease 2, zinc binding site	Interproscan
IPR001179	Domain	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR013022	Domain	Xylose isomerase-like, TIM barrel domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004478	Molecular Function	methionine adenosyltransferase activity	Interproscan
GO:0006556	Biological Process	S-adenosylmethionine biosynthetic process	Interproscan
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan