Genomic Location: Contig136:123333...125883
NR annotation: NMA49147.1, aspartate--tRNA ligase [Tissierellia bacterium]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Contig136.48 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| C5D509 | Aspartate--tRNA(Asp/Asn) ligase OS=Geobacillus sp. (strain WCH70) OX=471223 GN=aspS PE=3 SV=1 |
| B7GFR1 | Aspartate--tRNA(Asp/Asn) ligase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) OX=491915 GN=aspS PE=3 SV=1 |
| A9VIM8 | Aspartate--tRNA(Asp/Asn) ligase OS=Bacillus mycoides (strain KBAB4) OX=315730 GN=aspS PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0014144 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01336 all species → | tRNA_anti-codon | OB-fold nucleic acid binding domain | Domain | Interproscan |
| PF00152 all species → | tRNA-synt_2 | tRNA synthetases class II (D, K and N) | Domain | Interproscan |
| PF00456 all species → | Transketolase_N | Transketolase, thiamine diphosphate binding domain | Domain | Interproscan |
| PF02938 all species → | GAD | GAD domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045864 all species → | Homologous_superfamily | Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) | Interproscan |
| IPR004115 all species → | Homologous_superfamily | GAD-like domain superfamily | Interproscan |
| IPR047090 all species → | Domain | Aspartate-tRNA ligase, type 1, core domain | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR029061 all species → | Homologous_superfamily | Thiamin diphosphate-binding fold | Interproscan |
| IPR006195 all species → | Domain | Aminoacyl-tRNA synthetase, class II | Interproscan |
| IPR004365 all species → | Domain | OB-fold nucleic acid binding domain, AA-tRNA synthetase-type | Interproscan |
| IPR004524 all species → | Family | Aspartate-tRNA ligase, type 1 | Interproscan |
| IPR004364 all species → | Domain | Aminoacyl-tRNA synthetase, class II (D/K/N) | Interproscan |
| IPR002312 all species → | Family | Aspartyl/Asparaginyl-tRNA synthetase, class IIb | Interproscan |
| IPR005474 all species → | Domain | Transketolase, N-terminal | Interproscan |
| IPR029351 all species → | Domain | GAD domain | Interproscan |
| IPR047089 all species → | Domain | Aspartate-tRNA ligase, type 1, anticodon recognition domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22594 all species → | ASPARTYL/LYSYL-TRNA SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0016874 all species → | Molecular Function | ligase activity | Interproscan |
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0006418 all species → | Biological Process | tRNA aminoacylation for protein translation | Interproscan |
| GO:0004815 all species → | Molecular Function | aspartate-tRNA ligase activity | Interproscan |
| GO:0006422 all species → | Biological Process | aspartyl-tRNA aminoacylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01876 | DARS2, aspS; aspartyl-tRNA synthetase | EC:6.1.1.12 | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
