Gene detail

Detailed information of evm.model.Contig139.4 in Hemicorallium imperiale

Genomic Location: Contig139:5176...5619
NR annotation: OED34838.1, translation initiation factor IF-3 [PVC group bacterium (ex Bugula neritina AB1)]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig139.4 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q74D03	Translation initiation factor IF-3 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=infC PE=3 SV=1
Q8XZ28	Translation initiation factor IF-3 OS=Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000) OX=267608 GN=infC PE=3 SV=1
Q5LQ58	Translation initiation factor IF-3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=infC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009556 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05198 all species →	IF3_N	Translation initiation factor IF-3, N-terminal domain	Domain	Interproscan
PF00707 all species →	IF3_C	Translation initiation factor IF-3, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001288 all species →	Family	Translation initiation factor 3	Interproscan
IPR036788 all species →	Homologous_superfamily	Translation initiation factor 3 (IF-3), C-terminal domain superfamily	Interproscan
IPR019814 all species →	Domain	Translation initiation factor 3, N-terminal	Interproscan
IPR036787 all species →	Homologous_superfamily	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	Interproscan
IPR019815 all species →	Domain	Translation initiation factor 3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10938 all species →	TRANSLATION INITIATION FACTOR IF-3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032790 all species →	Biological Process	ribosome disassembly	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02520	infC, MTIF3; translation initiation factor IF-3	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.