Genomic Location: not available for this species
NR annotation: CAA0078743.1, Acetyl-coenzyme A synthetase [BD1-7 clade bacterium]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Contig147.27 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9HV66 | Acetyl-coenzyme A synthetase 2 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=acsA2 PE=3 SV=1 |
| Q0AAW0 | Acetyl-coenzyme A synthetase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=acsA PE=3 SV=1 |
| Q21LV0 | Acetyl-coenzyme A synthetase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=acsA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000990 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00501 all species → | AMP-binding | AMP-binding enzyme | Family | Interproscan |
| PF16177 all species → | ACAS_N | Acetyl-coenzyme A synthetase N-terminus | Family | Interproscan |
| PF13193 all species → | AMP-binding_C | AMP-binding enzyme C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000873 all species → | Domain | AMP-dependent synthetase/ligase domain | Interproscan |
| IPR020845 all species → | Conserved_site | AMP-binding, conserved site | Interproscan |
| IPR042099 all species → | Homologous_superfamily | ANL, N-terminal domain | Interproscan |
| IPR032387 all species → | Domain | Acetyl-coenzyme A synthetase, N-terminal domain | Interproscan |
| IPR025110 all species → | Domain | AMP-binding enzyme, C-terminal domain | Interproscan |
| IPR011904 all species → | Family | Acetate-CoA ligase | Interproscan |
| IPR045851 all species → | Homologous_superfamily | AMP-binding enzyme, C-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24095 all species → | ACETYL-COENZYME A SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003987 all species → | Molecular Function | acetate-CoA ligase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006085 all species → | Biological Process | acetyl-CoA biosynthetic process | Interproscan |
| GO:0016208 all species → | Molecular Function | AMP binding | Interproscan |
| GO:0019427 all species → | Biological Process | acetyl-CoA biosynthetic process from acetate | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01895 | ACSS1_2, acs; acetyl-CoA synthetase | EC:6.2.1.1 | Lipid biosynthesis proteins | ko01004 | deepkoala |
Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
