Gene detail

Detailed information of evm.model.Contig147.51 in Hemicorallium imperiale

Genomic Location: not available for this species
NR annotation: NRB41249.1, cold shock domain-containing protein [Pseudomonadales bacterium]
Species Hemicorallium imperiale · all data for this species · gene families

Sequence

No sequence record for evm.model.Contig147.51 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P95459	Major cold shock protein CspA OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=cspA PE=2 SV=1
P0A106	Cold shock protein CapB OS=Pseudomonas fragi OX=296 GN=capB PE=1 SV=1
P0A105	Cold shock protein CapB OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=capB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002110 (this species only)
Transcription factor family	CSD · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313 all species →	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR002059 all species →	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR019844 all species →	Domain	Cold-shock (CSD) domain	Interproscan
IPR011129 all species →	Domain	Cold shock domain	Interproscan
IPR050181 all species →	Family	Cold shock domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11544 all species →	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03704	cspA; cold shock protein	-	Transcription	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.