Gene detail

Detailed information of evm.model.Contig40.19 in Hemicorallium imperiale

Genomic Location: Contig40:55643...58239
NR annotation: OED34320.1, phosphoribosylpyrophosphate synthetase [PVC group bacterium (ex Bugula neritina AB1)]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Contig40.19

ATGAATGTATGTGCTCTTGTTTTAGCTGCTGGTTTGGGGAAACGGATGTTTTCTCCAACACCCAAGGTTCTTCATAGAATTGCAGAAAAACCTATACTCTCGTTTCTTTTGGATTCTATTCAAGAAACTGTGGTTGAGAAAATTTTTGTTGTTACAGGGCAACAAAGTTCTTCTGTTCAAAAAGAAGTTGGTTCTCGTGGAGTTTGTTTATTTCAGGAGAACCTTTTGGGCACTGCAGATGCTGTTAAACAGTTACAATATCATTTTCTTTCTCAAAAAGAATCTTTTTCTCATGTTTTGGTTTTTTGTGGAGATGTGCCTTTTATTTCTTCTAGGACGATAGCGAGTCTTTTAAAGAAAACCATTGAAGAAAAATTAAAAGGGCTCGTTTTGGTTGCCAGTTTGAATGATCCCTTTGGATATGGTCGCATTGTCGAGGATGTGAAAGGATATGTTCAGGTCATTATAGAAGAAAAAAATGCTACGGATGATCAAAAAAAAATCCAAAGAGTCAATTCTGGACTATACTGTTTTGAAACAAAAGCCTTGTTTGAAGTTCTCAATGATATTCTTTTGGATGAGCGACACCGTGAATATCCTTTGCCAGAAGTTGCCCGTTTATTTTATGCTCGTGATTGGTCGATGAAATCATTGCTATGTATAGATTCTTGGGAGATTCGAGGAATCAATACGCAAAAGGATCTTGCTGATTTGGATGATTGGTTTCAAAAAAAGGTTAAAGAAAAATTGATGCACCAAGGTATTTCTTTTGTTGCCCCAGATTTATCTTATGTCTGTGCAGATGTGACTATGGGCAAAGATGTTACAATTGAGCCATTTGTTATGATTCATAGAGGATATGAAACGGTGAGAAAAGGGATCAAATTGATTTCTGGAAATGCCAATAGGAATCTTTCCTCTGCAATTGCTAAAAGTTTGAAACTTCCCTTAGCAGATGTGACCGTTTCTCGATTTGCTGATGGAGAAGTTTTTGTAAAAATCAATGAGAATATTCGTGGTTATGATGTTTTTGTCATTCAACCAACTTGTGCTCCTGTCAATGATAATATCATGGAGCTTTTGATTATATTGGATTCTCTCAAAAGAGCTTCTGCAAAGAGAGTCACCGTTGTTATGCCTTACTACGGCTATGCCCGTCAAGATCGCAAAGATGAGTCTCGGGTTCCTATTTCAGCAAGATTGATGGCTAATATTATTGAAACTGCAGGTGCAGATCGAATTTTGGCTATGGATTTGCATGCCGATCAAATCCAGGGATTTTTTGACAAACCTCTGGATCATCTTTATGCTTCTCCTGTTTTTATTCAATATCTTTTGCATAAAAAAGATTTTCAAAATATGGTTATTGTGGCACCAGATGTTGGTGCTATTAAGAGAGCCCGTTCTTTTGCAAAAAAATTAAATGTCGATTTAGTTGTTGTTGACAAAAGAAGAATCAATAGTTTGCAAGCTGAAGTGATGCACATTTTGGGTGATGTCAAAGGTCGTTTTGCTGTCATTGTCGATGACATGGTTGCGACAGCAGGTTCTTTAACTGAAGCTGCTAATACTATTGAAGCTAATGGTGCAAGAGGGGTTATGGCTGTTGCGACTCATCCTGTTTTGGTCGGCCCTGCGATTGAACGCATTGAAGACTCTTGTATTTGTGAATTGATCGTTTCGGATTCTATCCCTGTTGGGAAAGAAAAAGAAAGTTCTAAAATAAAAGTTTTATCGGTAGCGCCTCTTTTAGGCGAAGCCATTCAAAGAATTCATAACGATGAGTCTTTTGGTAAGCAATTTTCAAAAAAATTGCGAAACAATGGACAAATTCCTGCGGTTGTTTATAGCAAAAAACAACACAAAAGTTTATCTGTTGAAGAAGTTGATTTTAAAAAGATTCTCAAAGGTCATGACAGTGTTGGTAATTTAGTTTTTTCGCTTTTATTTGAAGAGAAAAAAGACAATCGTCATGCTGTGATTCAAGAACTTCAAAGGAATCCTTTGACGGGAAAGTTTTTGCATATAGACTTTAAGGAAATTTCCTTAAAGGAAGAAATAGAGGCGAAGGTTCCGATTGCTATAAAGGGGACTCCTGTTGGGGTTCAATTGGGAGGTTTGGTTCAACAGCATTTGCGCGAAATTAGTATCCGTTGTTTACCCGAGAATCTTCCAGATGTTTATAAACTGGATATCACACATTTAAATATCGGTGAATTTGTCCATGTCTCTAATCTTCCTGCTGTCAAAAATATAACAATCATCCAAAATCTGGATGATATGGTTTTAGCGGTTGTTTCTTCAAAAACCGCAGAAATGGAAAGTTCTGAAAGCCCAGAGGAAGAGATCAAACATCCCGAAGTGATTGGTGAAAAAAAAGAGAAAGATTCTGAGTAA

Transcript

evm.model.Contig40.19

ATGAATGTATGTGCTCTTGTTTTAGCTGCTGGTTTGGGGAAACGGATGTTTTCTCCAACACCCAAGGTTCTTCATAGAATTGCAGAAAAACCTATACTCTCGTTTCTTTTGGATTCTATTCAAGAAACTGTGGTTGAGAAAATTTTTGTTGTTACAGGGCAACAAAGTTCTTCTGTTCAAAAAGAAGTTGGTTCTCGTGGAGTTTGTTTATTTCAGGAGAACCTTTTGGGCACTGCAGATGCTGTTAAACAGTTACAATATCATTTTCTTTCTCAAAAAGAATCTTTTTCTCATGTTTTGGTTTTTTGTGGAGATGTGCCTTTTATTTCTTCTAGGACGATAGCGAGTCTTTTAAAGAAAACCattgaagaaaaattaaaaggGCTCGTTTTGGTTGCCAGTTTGAATGATCCCTTTGGATATGGTCGCATTGTCGAGGATGTGAAAGGATATGTTCAGGTCATTATAGAAGAAAAAAATGCTACGGATGATCAAAAAAAAATCCAAAGAGTCAATTCTGGACTATACTGTTTTGAAACAAAAGCCTTGTTTGAAGTTCTCAATGATATTCTTTTGGATGAGCGACACCGTGAATATCCTTTGCCAGAAGTTGCCCGTTTATTTTATGCTCGTGATTGGTCGATGAAATCATTGCTATGTATAGATTCTTGGGAGATTCGAGGAATCAATACGCAAAAGGATCTTGCTGATTTGGATGATTGGTTTCAAAAAAAGGTTAAAGAAAAATTGATGCACCAAGGTATTTCTTTTGTTGCCCCAGATTTATCTTATGTCTGTGCAGATGTGACTATGGGCAAAGATGTTACAATTGAGCCATTTGTTATGATTCATAGAGGATATGAAACGGTGAGAAAAGGGATCAAATTGATTTCTGGAAATGCCAATAGGAATCTTTCCTCTGCAATTGCTAAAAGTTTGAAACTTCCCTTAGCAGATGTGACCGTTTCTCGATTTGCTGATGGAGAAGTTTTTGTAAAAATCAATGAGAATATTCGTGGTTATGATGTTTTTGTCATTCAACCAACTTGTGCTCCTGTCAATGATAATATCATGGAGCTTTTGATTATATTGGATTCTCTCAAAAGAGCTTCTGCAAAGAGAGTCACCGTTGTTATGCCTTACTACGGCTATGCCCGTCAAGATCGCAAAGATGAGTCTCGGGTTCCTATTTCAGCAAGATTGATGGCTAATATTATTGAAACTGCAGGTGCAGATCGAATTTTGGCTATGGATTTGCATGCCGATCAAATCCAGGGATTTTTTGACAAACCTCTGGATCATCTTTATGCTTCTCCTGTTTTTATTCAATATCTTTTGCATAAAAAAGATTTTCAAAATATGGTTATTGTGGCACCAGATGTTGGTGCTATTAAGAGAGCCCGTTCTTTTGCAAAAAAATTAAATGTCGATTTAGTTGTTGTTGACAAAAGAAGAATCAATAGTTTGCAAGCTGAAGTGATGCACATTTTGGGTGATGTCAAAGGTCGTTTTGCTGTCATTGTCGATGACATGGTTGCGACAGCAGGTTCTTTAACTGAAGCTGCTAATACTATTGAAGCTAATGGTGCAAGAGGGGTTATGGCTGTTGCGACTCATCCTGTTTTGGTCGGCCCTGCGATTGAACGCATTGAAGACTCTTGTATTTGTGAATTGATCGTTTCGGATTCTATCCCTGTtgggaaagaaaaagaaagttctaaaATAAAAGTTTTATCGGTAGCGCCTCTTTTAGGCGAAGCCATTCAAAGAATTCATAACGATGAGTCTTTTGGTAagcaattttcaaaaaaattgcgAAACAATGGACAAATTCCTGCGGTTGTTTATagcaaaaaacaacacaaaagtTTATCTGTTGAAGAAGTTGATTTTAAAAAGATTCTCAAAGGTCATGACAGTGTTGGTAATTTAGTTTTTTCGCTTTTATTTGAAGAGAAAAAAGACAATCGTCATGCTGTGATTCAAGAACTTCAAAGGAATCCTTTGACGGGAAAGTTTTTGCATATAGACTTTAAGGAAATTTCCTTAAAGGAAGAAATAGAGGCGAAGGTTCCGATTGCTATAAAGGGGACTCCTGTTGGGGTTCAATTGGGAGGTTTGGTTCAACAGCATTTGCGCGAAATTAGTATCCGTTGTTTACCCGAGAATCTTCCAGATGTTTATAAACTGGATATCACACATTTAAATATCGGTGAATTTGTCCATGTCTCTAATCTTCCTGCTGTCAAAAATATAACAATCATCCAAAATCTGGATGATATGGTTTTAGCGGTTGTTTCTTCAAAAACCGCAGAAATGGAAAGTTCTGAAAGCCCAGAGGAAGAGATCAAACATCCCGAAGTGATTGGtgaaaaaaaagagaaagattCTGAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AJL7	Ribose-phosphate pyrophosphokinase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) OX=177439 GN=prs PE=3 SV=1
Q7M8J0	Ribose-phosphate pyrophosphokinase OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W) OX=273121 GN=prs PE=3 SV=1
Q8R753	Ribose-phosphate pyrophosphokinase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=prs PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001449 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13793 all species →	Pribosyltran_N	N-terminal domain of ribose phosphate pyrophosphokinase	Domain	Interproscan
PF00483 all species →	NTP_transferase	Nucleotidyl transferase	Family	Interproscan
PF01386 all species →	Ribosomal_L25p	Ribosomal L25p family	Domain	Interproscan
PF14572 all species →	Pribosyl_synth	Phosphoribosyl synthetase-associated domain	Domain	Interproscan
PF14693 all species →	Ribosomal_TL5_C	Ribosomal protein TL5, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001021 all species →	Family	Ribosomal protein bL25, long-form	Interproscan
IPR029099 all species →	Domain	Ribose-phosphate pyrophosphokinase, N-terminal domain	Interproscan
IPR005835 all species →	Domain	Nucleotidyl transferase domain	Interproscan
IPR037515 all species →	Family	Ribose-phosphate pyrophosphokinase, bacterial-type	Interproscan
IPR029057 all species →	Homologous_superfamily	Phosphoribosyltransferase-like	Interproscan
IPR037121 all species →	Homologous_superfamily	Large ribosomal subunit protein bL25, C-terminal	Interproscan
IPR000842 all species →	Conserved_site	Phosphoribosyl pyrophosphate synthetase, conserved site	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR005946 all species →	Family	Ribose-phosphate pyrophosphokinase	Interproscan
IPR029751 all species →	Domain	Large ribosomal subunit protein bL25, L25 domain	Interproscan
IPR020056 all species →	Homologous_superfamily	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal	Interproscan
IPR011035 all species →	Homologous_superfamily	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily	Interproscan
IPR020057 all species →	Domain	Large ribosomal subunit protein bL25, beta domain	Interproscan
IPR000836 all species →	Domain	Phosphoribosyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10210 all species →	RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0008097 all species →	Molecular Function	5S rRNA binding	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0004749 all species →	Molecular Function	ribose phosphate diphosphokinase activity	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0009156 all species →	Biological Process	ribonucleoside monophosphate biosynthetic process	Interproscan
GO:0044249 all species →	Biological Process	obsolete cellular biosynthetic process	Interproscan
GO:0002189 all species →	Cellular Component	ribose phosphate diphosphokinase complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006015 all species →	Biological Process	5-phosphoribose 1-diphosphate biosynthetic process	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0009165 all species →	Biological Process	nucleotide biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03723	mfd; transcription-repair coupling factor (superfamily II helicase)	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.