Detailed information of evm.model.Contig43.21 in Hemicorallium imperiale

Genomic Location: Contig43:26086...26514
NR annotation: CAA0083695.1, 50S ribosomal protein L13 [BD1-7 clade bacterium]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig43.21 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
C5BS66Large ribosomal subunit protein uL13 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) OX=377629 GN=rplM PE=3 SV=1
Q21FV8Large ribosomal subunit protein uL13 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=rplM PE=3 SV=1
Q0A6F3Large ribosomal subunit protein uL13 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rplM PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008178 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00572
all species →		Ribosomal_L13Ribosomal protein L13FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023563
all species →		Conserved_siteLarge ribosomal subunit protein uL13, conserved siteInterproscan
IPR036899
all species →		Homologous_superfamilyLarge ribosomal subunit protein uL13 superfamilyInterproscan
IPR005822
all species →		FamilyLarge ribosomal subunit protein uL13Interproscan
IPR005823
all species →		FamilyLarge ribosomal subunit protein uL13, bacterial-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11545
all species →		RIBOSOMAL PROTEIN L13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0017148
all species →		Biological Processnegative regulation of translationInterproscan
GO:0022625
all species →		Cellular Componentcytosolic large ribosomal subunitInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02871RP-L13, MRPL13, rplM; large subunit ribosomal protein L13-Ribosomeko03011deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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