Gene detail

Detailed information of evm.model.Contig43.22 in Hemicorallium imperiale

Genomic Location: Contig43:26528...26920
NR annotation: NRA42553.1, 30S ribosomal protein S9 [Pseudomonadales bacterium]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig43.22 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3PBL9	Small ribosomal subunit protein uS9 OS=Cellvibrio japonicus (strain Ueda107) OX=498211 GN=rpsI PE=3 SV=1
Q21FV9	Small ribosomal subunit protein uS9 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=rpsI PE=3 SV=1
A6VXZ2	Small ribosomal subunit protein uS9 OS=Marinomonas sp. (strain MWYL1) OX=400668 GN=rpsI PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004062 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00380 all species →	Ribosomal_S9	Ribosomal protein S9/S16	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023035 all species →	Family	Small ribosomal subunit protein uS9, bacterial/plastid	Interproscan
IPR020574 all species →	Conserved_site	Small ribosomal subunit protein uS9, conserved site	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR000754 all species →	Family	Small ribosomal subunit protein uS9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21569 all species →	RIBOSOMAL PROTEIN S9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02996	RP-S9, MRPS9, rpsI; small subunit ribosomal protein S9	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.