Genomic Location: Contig43:27102...27695
NR annotation: CAA0083707.1, Ubiquinol-cytochrome c reductase iron-sulfur subunit [BD1-7 clade bacterium]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Contig43.23 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O31214 | Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) OX=572477 GN=petA PE=3 SV=2 |
| P81380 | Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Blastochloris viridis OX=1079 GN=petA PE=3 SV=2 |
| P23136 | Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodospirillum rubrum OX=1085 GN=petA PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008193 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00355 all species → | Rieske | Rieske [2Fe-2S] domain | Domain | Interproscan |
| PF10399 all species → | UCR_Fe-S_N | Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017941 all species → | Domain | Rieske [2Fe-2S] iron-sulphur domain | Interproscan |
| IPR036922 all species → | Homologous_superfamily | Rieske [2Fe-2S] iron-sulphur domain superfamily | Interproscan |
| IPR006317 all species → | Domain | Ubiquinol-cytochrome c reductase, iron-sulphur subunit | Interproscan |
| IPR014349 all species → | Family | Rieske iron-sulphur protein | Interproscan |
| IPR019470 all species → | Domain | Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal | Interproscan |
| IPR019546 all species → | Conserved_site | Twin-arginine translocation pathway, signal sequence, bacterial/archaeal | Interproscan |
| IPR006311 all species → | Conserved_site | Twin-arginine translocation pathway, signal sequence | Interproscan |
| IPR005805 all species → | Domain | Rieske iron-sulphur protein, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10134 all species → | CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0051537 all species → | Molecular Function | 2 iron, 2 sulfur cluster binding | Interproscan |
| GO:0008121 all species → | Molecular Function | ubiquinol-cytochrome-c reductase activity | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00411 | UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit | EC:7.1.1.8 | Non-alcoholic fatty liver disease | ko04932 | deepkoala |
Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
