Gene detail

Detailed information of evm.model.Contig58.8 in Hemicorallium imperiale

Genomic Location: Contig58:137803...143501
NR annotation: ELU12823.1, hypothetical protein CAPTEDRAFT_91917, partial [Capitella teleta]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Contig58.8

ATGACAGCTGGTAGCTTGGAGATGAGTTTCAGTTGCTTCCCAACCTCATCAGGCCCGCAGAATGAGCAGCAGCGAGCGGTGGTGGAGGCGTTTATGCACGCGTGGACGGCATACAAGACATACGCATGGGGACACGATGAGCTGAGGCCGGTGTCCAAGGGATGGCAGGAGTGGTTTGGTATTGGTCTAACCATCGTCGACTCCCTAGACACCATGTATATCATGGGGCTCAAGGATGAGTTCAAACTTAGCCGTGACTGGGTAGCGCAGAATATGACCTTGAAGAAGGACATAGATGCACAGCTGTTTGAGATCGTTATCCGGGCACTCGGTGGTCTACTGAGTGCCTACCATCTCTCAGACGACAAAGTATTCCTCAACAAAGCCATTGAGCTTGGTGAAGGGCTGTTCCCCTGTTTCCATGGTCCTACCAAGATCCCGTGTAACCGTATCAACCTAAAGTCTGGTCGTGGCAGCTTCATCGAGATCAGCACAGCAGAGACCGGCACCATCCAACTAGAGTTTAGAGACCTGGCACGCTCCTCCAATATGACCAAGTTTGAGAAAGCAATGGATGACATCTCCCTACATCTTCACAATCTCCCCAAGCTGGACGGCCTTGTGTCATGCTTTATAAACTCTCAGACCGGCCTGTTCCGCCCCTCGTCCACCGTCTCAGTTGGAGCCAGTGCTGATAGTTACTATGAGTACCTGCTCAAACAGTGGCTGCAGACGGGCAAGTCTAAGGAGTGGTTAAAGAATGATTATCTAGAAGCAGTTGAAGGGACCAAGAAGCATCTACTGCGTTACAGTGAGCCGAGTCGCATGGCGTTTGTCGGTGCTCTCAGCAGTATGACATCTAAGGGGTTCAGGTCTGAGATGGAGCACCTTGCCTGTTTCCTCCCTGGTACCCTGGCACTGGGTTACATGGAGGGCCTGGACAAGTCCCACTTGGACCTGGCAACTGAGCTAACAAAAACCTGCTATGAGATGTACCACCGTATGCCGACTGGTCTCAGCCCGGAGGTGGTTGGTGTCAACATTAACCCCAATGGGAAGGATGATCTCTATGTCTCCTTGGGTGCAGTGTCAAGTCCCACCTGTATAACCATGGTTCCTATGTTATACCTTACAACTAACTGTACAAGTGTAACCTTGGTTCTTATGTTTGACCTTACAACTAACTGTACAAGTGTAACCTTGATTCTTATGTTTGACCTTACAACTGACTGTACAAGTGTAACCTTGGTTCCTATGTTTGACCTTACAACTGACTGTACAAGTGTAACCTTGGTTCTTATGTTTGACCTTACAACTGACTGTACAAATGTAACCTTGGTTCTTATGTTTGACCTTACAACTGACTGTACAAGTGTAACCTTGGTTCTTATGTTTGACCTTACAACTGACTGTACAAGTGTAACCTTGGTTCTTATGTTTGACCTTACAACTGACTGTACAAGTGTAACCTTGGTTCCTATGTTTGACCTTACAACTGACTGTACAAGTGTAACCTTGGTTCTTATGTTTGACCTTACAACTGACTGTACAAGTGTAACCTTCAGTCCTATGTTTGACCTTACAACTGACTGTACAAGTGTAACCTTCAATCCTATGTTTGACCTTACAACTGACTGTATAACTCTAACCTTGGTTCCCATGTTTGACCTTACACGCCCGGAGACGGTAGAGAGCCTCTTCTACATGTACCGTGCCACCAAGGACAAGAAGTACCAGCAATGGGGCTGGGAGATCTTCAGGGCCTTTGAGAAGCACACCCGCTTAAAGGAGGGCTATGCCTCCATCGACAGTGTACGTCGCCCAGAGAACCCGGGCTACAGGGACAAGATGGAGACCTTCTACCTTGCCGAAACCCTTAAATACCTGTACTTGTTGTTTAGCGATGATCCTAATCTTTTACCACTCGAAAAGTTTGTGATAAATACAGAAGCCCACCCCTTACCACGATACCACAGCTAG

Transcript

evm.model.Contig58.8

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UKM7	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Homo sapiens OX=9606 GN=MAN1B1 PE=1 SV=2
B2GUY0	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Rattus norvegicus OX=10116 GN=Man1b1 PE=2 SV=2
A2AJ15	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Mus musculus OX=10090 GN=Man1b1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001849 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01532 all species →	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036026 all species →	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan
IPR050749 all species →	Family	Glycosyl Hydrolase Family 47	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR001382 all species →	Family	Glycoside hydrolase family 47	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11742 all species →	MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004571 all species →	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:1904382 all species →	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Contig58.8.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.