Detailed information of evm.model.HiC_scaffold_1.184 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_1:2817745...2840460
NR annotation: XP_015754770.1, PREDICTED: cartilage oligomeric matrix protein-like [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q03350Thrombospondin-2 OS=Mus musculus OX=10090 GN=Thbs2 PE=1 SV=2
Q9R0G6Cartilage oligomeric matrix protein OS=Mus musculus OX=10090 GN=Comp PE=1 SV=2
P49747Cartilage oligomeric matrix protein OS=Homo sapiens OX=9606 GN=COMP PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05735TSP_CThrombospondin C-terminal regionFamilyInterproscan
PF12947EGF_3EGF domainDomainInterproscan
PF02412TSP_3Thrombospondin type 3 repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008859DomainThrombospondin, C-terminalInterproscan
IPR035976Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR000436DomainSushi/SCR/CCP domainInterproscan
IPR017897RepeatThrombospondin, type 3 repeatInterproscan
IPR028974Homologous_superfamilyTSP type-3 repeatInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR024731DomainEGF domainInterproscan
IPR003367RepeatThrombospondin, type 3-like repeatInterproscan
IPR000998DomainMAM domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10199THROMBOSPONDINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

TOP