Gene detail

Detailed information of evm.model.HiC_scaffold_10.251 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_10:3116754...3123643
NR annotation: XP_047144491.1, fibrillin-1-like, partial [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_10.251

atgattgATAAAAATGGCAAAGTTTATACGTCTCTTGGAAGTGGTGGCATTGCACCTGCAGGATTCGCAGAAAGCTGGAAgCTCCCTGTTGGAAGCAGTTTGTTTTATTACAAAGGAGAAGAGGCGAAATGTACTGCTCAAAGAGTAAAACATTACTGCACGTGCCAAGAATTGTGCTGTGGACGAAGAGTAGTAGATTGCAATTTCAAAAAGATCGCAGATCGACCAAAATACATCCAAGGTTTCAAAGGATGGAAGAATCTGAATTTCCCTGGTGGAAAACATTGtggtaaaagaagaagaagaagatcaacTAGAAATGATATTATTcttcctgatgatgatgacgtcactAGTTATATCTATGATCCTGCACCCATTTTAAAAGTCAATATTCCTAAATGGCCCACTGAATCTGGAAAGACATTGCAGCAAGTGACGTCATACTGTGAAAATGCAATAAAGAAATCAGAACCAGGAGAAATATGCAAATTAATTcctgattttgattttaatccATTTATTACACAATGCATTGAAGATATTCAgATCACGGATAATTATACTTTCGTAGCATCAGCTGTAAGAACAATGCAAGATGCATGTGAAGAGGTATTCTTAACAAATACATCATTCTGGCAAGCAGATGCATCCAAGAACAACACATTACAACCACCTACTGCCATTGCCAACACTCTATGCCCTAATTTATGCAGCGGAAATGGTAAATGCATCAATGCCACATGTGTCTGTGATTCCAAATTCACTTCAGCCGATTGTTCAATCGAGAAGAATAAAGGACCAACGGTTGAATCTATTCCATCGAAAGGTCTTTGTGACGTAAGAAAACGAGCTGATTGTTTGAAAACGAGGATCAATGGATATGattttcttgattctgatcaacTATCATGTCGTTTTACTCAAGTTCAGATTTCGGACAAGCCATATACGAAGATGTCAAAACGTGATGTCAACCCCGGATACCTTCTGAGTTTTGCTGAAATGTTGTGTGAACTGAAAAGCCATCCAGTGAAAATAAAAGGAGATGCAAAGAACACGACGGGGGTACCTTTTGCTGGTTATCTCTTTGATGTATCAAATGATGGCGTGGCGTACAGTTCAAAAGCTGCATTATACGTAATTTACGATTCCAAATGCATGGATTGCAAATCAGATACTGGAGCATGCGCACTCAAGACTGGGACTTGTTTGATTAATGGATATTGCTTTGCAAATGGTGAAACACATCAATATGATGCATGTTCAATTTGTGATTCGAGTCGAAACCTCAATTCATTCTCAATAGACGAAGGCCCTGGTTGTGCAGCAAGATGGGCGCCAGTTGCAACCAAAAATGACAAGATTCCTTTTGATTTATCAATTGACTTGGACGAGTTTAAAGACAAATTTGATATTTTAAGAGGACTTAGTGATAGAAAGATGGATTTTACAGTTTGCAATGTGATTTTTGGATATCTGGATGACCTTTCTCTGTGCAGGGCTTCTCAAGTCAGCAAAACGTGGAGGAGTATAATTTGTGTGAAAAACAGTGAATCAAAAAAGAGAGTTCGAGATTTTATATCAAAGCAAAAAGAATATTGTATCCTTATTGGAAAGGAAAATGTTGGACTGCAAAAAAGGACAAGAGCAATTGACACAGCTCGTAGTATTATAGAAAACACACCAGAAATGAACacaacaaaaatatttaaaacaaatGATGGACTAGCAAGGTCTGGAGATTTCAGTGACTCAGATAGTTATAGGCCGTGCCCTAAATGCAGTTCTCCAGCAAAAATTAATAAAGGCATACATTCTGCATCATGCAGCTTTTGCAGGGAAGAATTTTGTGtagattgttttaaaaaatggAATGAACACAAGTCAGAACTTTGTTCAAAAACAAAATCGAAGAACACTCCATCTTCACAGAAGGGAAAACAGAAGAAATATTTAAGTGGaacaaaacaaagtagaaaCCGATTAAGAAGATTATCATCTCAAGGAAAATGA

Transcript

evm.model.HiC_scaffold_10.251

Protein

Uniprot

Uniprot term	Description
Q8N2E2	von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens OX=9606 GN=VWDE PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF07974	EGF_2	EGF-like domain	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047147	Family	F-box only protein 5/43	Interproscan
IPR002867	Domain	IBR domain	Interproscan
IPR013111	Domain	EGF-like domain, extracellular	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15493	F-BOX ONLY PROTEIN 5 AND 43	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007088	Biological Process	regulation of mitotic nuclear division	Interproscan
GO:0045835	Biological Process	negative regulation of meiotic nuclear division	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan