Detailed information of evm.model.HiC_scaffold_10.256 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_10:3161895...3182185
NR annotation: XP_029179501.2, transport and Golgi organization protein 6 homolog isoform X2 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9C0B7Transport and Golgi organization protein 6 homolog OS=Homo sapiens OX=9606 GN=TANGO6 PE=1 SV=2
Q8C3S2Transport and Golgi organization protein 6 homolog OS=Mus musculus OX=10090 GN=Tango6 PE=1 SV=1
Q8NFU7Methylcytosine dioxygenase TET1 OS=Homo sapiens OX=9606 GN=TET1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12851Tet_JBPOxygenase domain of the 2OGFeDO superfamily DomainInterproscan
PF02008zf-CXXCCXXC zinc finger domainDomainInterproscan
PF10363RTP1_C1Required for nuclear transport of RNA pol II C-terminus 1RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002857DomainZinc finger, CXXC-typeInterproscan
IPR024779Domain2OGFeDO JBP1/TET, oxygenase domainInterproscan
IPR019451DomainRNA polymerase II assembly factor Rtp1, C-terminalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR040175FamilyMethylcytosine dioxygenase TET1/2/3Interproscan
IPR046942DomainMethylcytosine dioxygenase TET1-3, oxygenase domainInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23358UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006211Biological Processobsolete 5-methylcytosine catabolic processInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0070579Molecular Function5-methylcytosine dioxygenase activityInterproscan
GO:0080111Biological Processobsolete DNA demethylationInterproscan

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