Gene detail

Detailed information of evm.model.HiC_scaffold_10.266 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_10:3329734...3343083
NR annotation: XP_012559035.1, neurogenic locus notch homolog protein 2 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_10.266

atggAGATTAAATTCTTAATATTATGGCTACTAATGTTGGAAATAATTCATGTTTACGCCTCGACGATAGTCCAGAGAAAATCAAGCGAAATAAAAAGCGATGAAGATCGACAAACGCGACTGCGCTCATCGTTAAACGCGAACAAAAACGAGAAACAAGTGAATAAAAATACTAAAAGACAATATGTTTTCTTCCCTGGAGATGATGAGATGGggcatcatcattttcatgaaGGATTTTATGGCGGGCATCATCACCATGGCGGATACCACGGCGATTATGATGCCGGATTTCACGCCGGATATCATGACGAacatggttatgatgatgatcatggcgATGAGATAGCTGATGATTCTGAAGAACCTCATGAGTATGAACATATACATCATCAATACAAACATATTCATCACGTCATTCATGGTCGCTGTGACCCATCTCCTTGTCTAAATGGTGGTACTTGCACCATTCTATCTCATGGCTACGAATGTACATGCCCTCTTGGTTATCTTGGCATGCATTGTGAAACTCGAAGTCAATGTGAACCGAATCCTTGTCGAAACGGAGGAACTTGCTACGATGTCGGAGGCAGCTTTGAATGCGTGTGCATGACTGGATACAAGGGTGTCAGATGCGAAGAGGAAAACAAATGCCATCCTAACCCATGTAAAAACGGAGGAATGTGTACTGAAACTGAAGATGGTTATGAATGTTCCTGCAAAGAGGGATTCAAAGGAAAGATATGCGAAGAAACCAATCAGTGTAGTCCAAATCCTTGCAAAAATGGCGGAACTTGCACTGAGAGAAATGGAAAATTCGAATGCACGTGTACTATTGGTTTCAAGGGACTCACATGTGAAGCAAGAAGTAGCTGCTCGTCAAATCCTTGCCTCAATGGTGGAACTTGCAATGAAGAGAACATCGGTTACAGCTGTACATGTCGTGTTGGATATAAAACATCAATTGCCAAGATCATGTGTGCCATCCCAACCCATGCACTAATGGGGGAACCTGTTACGTCAAGAATGGTGCTCCGTTCTGCGCATGTCAAGAAGGTTTCATTGGTGACAAATGTCAAATATGTTTATGTTGCAGATGATGCTTGTCGTGAATGTGACCCACATGCGATCTGCGAAAAGGGAAAATGTTATTGTAAAGAAGGTTATGTTGGAGATGGGAAAACTTGCCAGAAAAAGAGTATGTGTTCACCAAACCCCTGTCAAAATGGAGGAACGTGTAAAGATGTAGATGGTTCGTATGATTGCGAATGTACAGTTGGATGGACGGGAGAAAATTGCCAAGataAGAAATACTGTGAACCAAACCCTTGTAAAAATGGCGGAAAATGCATTCTAGTAGTTGGTGGATACAAATGCAGTTGTGAAGGATTCAAGGGAGTTAATTGCGAAAAGCCTGATCCTTGTGATCCCAATCCCTGTCAACATAACGGAAAATGCACAGATGTTGGTGGCACTGCTTCTTGTGAATGCACTGATCTGAGATACACTGGTGATAAATGTCAAGTTGACAATTGTGCTAATTGTAGTCCATTTGCTGACTGCCTGAATGGAAAGTGTGTCTGCAAAACTGGCTACATTGGTAATGGACAAATCTGTGAAGCAGAGCCTGGAGGTCAAGGAGGTGATCCATGCAACCCAAGTCCATGCAAAAACGGTGGAACATGCGTTGTGACTGCTACCTCTTTTGTATGTAACTGTCAATCAGGTTACGAGGGAAAATATTGCCAAGataAAGTCGGAGGTGGTGCTGCCGATCCTTGTTCCCCGAACCCATGTAAAAACGGAGGAACGTGTCAAAGTGTTGGAGACAAACCAAAATGTACATGTGCTACTGGTTTCATGGGCACTTTTTGCGAAGATCCGTCCGGCGGTGGTACTACAGACGGCAATAAAGATCCGTGTCATCCCAATCCCTGCCTAAATGGAGGCACATGCAAGCAGAATGGTAATGGATTCGATTGCTTCTGCGAAGTGCAGTTCACTGGCAGTGTTTGTGAAGTTGACAAATGCTCTAAATGTGATCCGCACGCGAAATGTATCAATGGTCATTGCAAATGCCGGTCTGGGTACATTGGTAACGGCTACGAATGTGTTAGAAAAGGAACATGTGGTGGTAATAAATGTGGCATGTATGCTGTTTGTGAAACAAGTGTTTGCCAATGCCAACCTGGGTTTACTGGAAATGGTTACACTTGCACTCCCGTAGCAGCAGCTCCTCCCCCTCCACCGCCTCCGCCGcctccaccaccacctcctccaccaccaccaccaccaccacctccgCCACCTCCACCGCCACCTGCGATGGGATGTGGTTACTGCGAAGCACCAAGGCGATGTATCAATGGACTCTGCATAAGGATCGACCCATATAAGAGATCTTTGAATAAGCGAACAAGTAAGTCAACTTTActaaattgttttaatttgaaGGAAATACTAATTGAAGGACATGCTAATAAATGCTAA

Transcript

evm.model.HiC_scaffold_10.266

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR051830	Family	Neurogenic locus notch homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24033	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan