Gene detail

Detailed information of evm.model.HiC_scaffold_11.11 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_11:209175...212148
NR annotation: XP_022779443.1, uncharacterized protein LOC111320962, partial [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_11.11

ATGACGCTTCAGCAAAAAGCAACAACCAATGCACCTTCGTTGAACGACTGCCTAGAAACCGGCCCATCCCTGCAGAATCCTATTTGGGATATCCTTGTCAGAAATCGTACAAGACCAGTCACATTAGCAGGGGACGTGAAGCAAGCATTCCTGCAGATTAGAGTTAAAGAAAGCGACCGTGATGCTCTTCGGTTTCATTGGATTGTGGACAAAGACTTGAAGAAGATAAGAACTTTCAGATTTACACGTGTTCTATTTGGCTTAAATCAGTCTCCTTTTATACTTGGGGGTACTATAGAAAAACACTTGAACAGCAAAGAAGCAGAGTACCCAGATGAGGTGAAGGAGAAAAAGCGTAGTATTTATGTTGGTGATACATTGTTGTCTGGAGAGACGAAGGATGCCatggaaaagttgaaaaatacaGCCATCACATTCAAAGATGCAGGGCTTGAGTTGCATAATTGGCATTCGAATTTGCCAGAGCTAGATAATCAGAAAACAGTCACAGAAAATACAGATTCTAGTAAACAAAGCTATGCCAAAAGTCAACTTGGTGTGAAGAAAGAGGAAACAAAACTACTAGGCCTTATCTGGAACAAAACTGATGATGCCATTGGAGTAGACTTTCCAGAGAAGCAGAATAATATAACAAAGAGATCTGTTTTACAAAACATAGCTTCAGTATATGATCTATTGGGTATCGTTTCCCCCACAACGCTGAGAAGATGGACAACTTGGATGAAGAATTTACCAAGTAGAATCGAAATACCAAGAAGTATTACTTGTGCAGTAGAGGCCATAGAGAGTATTGAATTACATGCCTTTGGAGATTCAAGTAGTTATGGGACCTCAGCAGCAGTCTACATCGTTGTTTGCCAGAATTCAGGAGTCAGCCAGGGACTCTTAACTGCCAAATCAAGAGTGGAAAAGAAGGCACTCACTATACCAAGGCTAGAGCTTACTGCCGGCCACATGGCAGCTAATTTGATATCAAATGTCAAAGCGGCTCTTGATGGATTGCCAGTCAAATCCTGTTATGGTTGGTTAGACAGCACAGTCGCACTACACTGGATTAAGGGTTCTGGTGAATACAAACAGTTTGTTGAAAATCGAGTGAGACAGATTGGCCTGAAAGATTTCATAGTCTGGAGACATGTGGGCACAAAGGAGAATCCAGCAGGTATAGGAAGCAGAGGCTCCCAGGGCAATAAAATCCCATCTGAATGGTTTAGCGGCCCTGAATGGTTAGCAAACAAGGATAGATGGCCGACCGAGATCACCACAAGAGCAACTGAAACAACAGAGGCTGAAGCGAAACCAATCAAAGATATCTTCAGAGTAGTCGCTGTCAAGAATGATGAAATGGATCAGATCCTGGACAACTTCAGTTTCAGAAAGACAATGCATGTAACAGGCTGGATTAAGAGATTCACTGACAACTGCAGAACAAATAAAGTTGAACGACGCAGAGGATTGCTAACAACAGAAGAAATCCAAGAACAGATAAACTGGTGGATACACAGAGTTCAGGAAAGAGCCATCGGAACTGACATGTTTGAACATGACAGACAAGCATTGAACCTACAGAAGAACGAACAAGACACCTTCGAGTGCAAAGGACGAATTCAAGACAATTACCCAATTTACTTTCCAAGAAATGAGACATTTACTGGAAAATTTGTAACAGAATGTCATCTCATCACATTGCATGGGGGAGTTGGCTTAACAATGACGGAGTTTAACAAGAGCAGTTTTCATACAAGTCGTCACAGATATGACTGTCGGGCAATTCAAGCCAAGCCTAAAAGAGCTAATAGCAAGAAGAGGAAGGCCATAAAAAATCTATCGGAAAACGCAAAGACATTCGTAGCAGCTTCTAAGTGGGTGAAGACAATCATGAAGAGTAAGAAACTTAACGATTTCTtgattaaaaatgaaataaagtggCAATTCAATCTGAGCAAGGCCACATGGTGGGGTGGGCAATGCGAAAGGATCATTGGCTTGATTAAGCAGTCTCTTTACAAAGCAGTCGGAGGAGCTCTCCTGAGACTTAACGAGTTAAAAGAAGTCATGTTGGACATTGAAACGGCATTGAACAACAGACCACTCAGCTACGTAGAGGACGACGTTCAGCTTCTAGAACTAACGCCTAAGATGATGATGCTCGAAGACAACAACGCACTACTCGTCAAAGATGTACATTCAGAGAACAATGACCTGCGTAAAAGAGTGAAATACTTAGAGCAGTGCACGGACAGACATTGGAAGAGATATATGAGATATGTAGATATATAG

Transcript

evm.model.HiC_scaffold_11.11

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan